Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10082085	0.90[AMR][1000 genomes]
rs10436882	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10918343	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10918346	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12062293	1.00[MEX][hapmap]
rs12070881	1.00[ASW][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12079541	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16855520	1.00[MEX][hapmap]
rs16856607	1.00[MEX][hapmap]
rs16856694	1.00[MEX][hapmap]
rs58453027	1.00[AMR][1000 genomes]
rs6677013	1.00[MEX][hapmap]
rs73024189	0.81[AMR][1000 genomes]
rs73033908	0.90[AMR][1000 genomes]
rs73033912	0.90[AMR][1000 genomes]
rs73033931	0.90[AMR][1000 genomes]
rs73033937	0.90[AMR][1000 genomes]
rs73033944	0.90[AMR][1000 genomes]
rs73041247	0.89[AMR][1000 genomes]
rs7540985	0.90[AMR][1000 genomes]
rs7541117	0.90[AMR][1000 genomes]
rs7541280	0.87[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[AMR][1000 genomes]
rs9651038	1.00[ASW][hapmap];0.92[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166049000-166067200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:166051400-166068400	Weak transcription	Pancreas	Pancrea
3	chr1:166051600-166064400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:166055600-166064600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:166056000-166066200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:166058000-166066400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:166060000-166063400	Weak transcription	Right Atrium	heart
8	chr1:166060000-166064200	Weak transcription	Left Ventricle	heart
9	chr1:166060000-166064200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr1:166060400-166063200	Weak transcription	Spleen	Spleen
11	chr1:166060400-166063400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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