Variant report

Variant	rs10082085
Chromosome Location	chr1:166035639-166035640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10436882	0.90[AMR][1000 genomes]
rs10918334	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10918337	0.83[AMR][1000 genomes]
rs12062293	0.83[AMR][1000 genomes]
rs12079541	0.90[AMR][1000 genomes]
rs12081735	0.90[AMR][1000 genomes]
rs58453027	0.90[AMR][1000 genomes]
rs6426963	0.83[AMR][1000 genomes]
rs73024171	0.83[AMR][1000 genomes]
rs73024183	0.83[AMR][1000 genomes]
rs73024189	0.91[AMR][1000 genomes]
rs73033908	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033912	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033931	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033937	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033949	0.83[AMR][1000 genomes]
rs7524282	0.83[AMR][1000 genomes]
rs7526838	0.83[AMR][1000 genomes]
rs7540985	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166034000-166039000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:166034000-166050800	Weak transcription	Pancreas	Pancrea
3	chr1:166034400-166036600	Weak transcription	Right Atrium	heart
4	chr1:166034800-166035800	Enhancers	Brain Germinal Matrix	brain
5	chr1:166035200-166036000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:166035400-166036000	Weak transcription	Spleen	Spleen
7	chr1:166035600-166039400	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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