Variant report

Variant	rs73024171
Chromosome Location	chr1:166015761-166015762
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10082085	0.83[AMR][1000 genomes]
rs12062293	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16855485	0.85[AMR][1000 genomes]
rs6663577	0.85[AMR][1000 genomes]
rs73024148	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73024157	0.85[AMR][1000 genomes]
rs73024183	1.00[AMR][1000 genomes]
rs73024189	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73024881	0.85[AMR][1000 genomes]
rs73033908	0.83[AMR][1000 genomes]
rs73033912	0.83[AMR][1000 genomes]
rs73033931	0.83[AMR][1000 genomes]
rs73033937	0.83[AMR][1000 genomes]
rs73033944	0.83[AMR][1000 genomes]
rs7540985	0.83[AMR][1000 genomes]
rs7541117	0.83[AMR][1000 genomes]
rs7541280	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links