Variant report

Variant	rs6663577
Chromosome Location	chr1:166003245-166003246
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12062293	0.85[AMR][1000 genomes]
rs16855485	1.00[AMR][1000 genomes]
rs73024148	1.00[AMR][1000 genomes]
rs73024157	1.00[AMR][1000 genomes]
rs73024171	0.85[AMR][1000 genomes]
rs73024183	0.85[AMR][1000 genomes]
rs73024878	0.87[AMR][1000 genomes]
rs73024881	1.00[AMR][1000 genomes]
rs9427134	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166001600-166003800	Enhancers	Fetal Muscle Leg	muscle
2	chr1:166001800-166003800	Enhancers	Pancreas	Pancrea
3	chr1:166002200-166003800	Enhancers	Fetal Muscle Trunk	muscle
4	chr1:166002400-166009200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:166002600-166009200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:166003200-166009200	Weak transcription	Fetal Brain Female	brain
7	chr1:166003200-166009400	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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