Variant report
| Variant | rs12062293 |
|---|---|
| Chromosome Location | chr1:166017050-166017051 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:166009615..166012493-chr1:166015126..166017082,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000207341 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10082085 | 0.83[AMR][1000 genomes] |
| rs10436882 | 1.00[MEX][hapmap] |
| rs12081735 | 1.00[MEX][hapmap] |
| rs16855485 | 0.85[AMR][1000 genomes] |
| rs16855520 | 1.00[MEX][hapmap] |
| rs16856599 | 1.00[MEX][hapmap] |
| rs16856607 | 1.00[MEX][hapmap] |
| rs16856694 | 1.00[MEX][hapmap] |
| rs4656479 | 1.00[MEX][hapmap] |
| rs4657523 | 1.00[MEX][hapmap] |
| rs6663577 | 0.85[AMR][1000 genomes] |
| rs6677013 | 1.00[MEX][hapmap] |
| rs73024148 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs73024157 | 0.85[AMR][1000 genomes] |
| rs73024171 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73024183 | 1.00[AMR][1000 genomes] |
| rs73024189 | 0.80[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs73024881 | 0.85[AMR][1000 genomes] |
| rs73033908 | 0.83[AMR][1000 genomes] |
| rs73033912 | 0.83[AMR][1000 genomes] |
| rs73033931 | 0.83[AMR][1000 genomes] |
| rs73033937 | 0.83[AMR][1000 genomes] |
| rs73033944 | 0.83[AMR][1000 genomes] |
| rs7540985 | 0.83[AMR][1000 genomes] |
| rs7541117 | 0.83[AMR][1000 genomes] |
| rs7541280 | 0.87[ASW][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916491 | chr1:166000783-166948513 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
