Variant report

Variant	rs73033931
Chromosome Location	chr1:166033482-166033483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10082085	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10436882	0.90[AMR][1000 genomes]
rs10918334	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10918337	0.83[AMR][1000 genomes]
rs12062293	0.83[AMR][1000 genomes]
rs12079541	0.90[AMR][1000 genomes]
rs12081735	0.90[AMR][1000 genomes]
rs58453027	0.90[AMR][1000 genomes]
rs6426963	0.83[AMR][1000 genomes]
rs73024171	0.83[AMR][1000 genomes]
rs73024183	0.83[AMR][1000 genomes]
rs73024189	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73033908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033912	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033937	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033944	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033949	0.83[AMR][1000 genomes]
rs7524282	0.83[AMR][1000 genomes]
rs7526838	0.83[AMR][1000 genomes]
rs7540985	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541117	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541280	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166027600-166034800	Weak transcription	Fetal Brain Female	brain
2	chr1:166031400-166034400	Enhancers	Fetal Muscle Leg	muscle
3	chr1:166032000-166035200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:166032200-166034000	Enhancers	Fetal Muscle Trunk	muscle
5	chr1:166032200-166034000	Enhancers	Lung	lung
6	chr1:166032400-166034600	Weak transcription	Fetal Brain Male	brain
7	chr1:166032800-166034000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:166032800-166034200	Enhancers	Adipose Nuclei	Adipose
9	chr1:166032800-166034800	Weak transcription	Brain Germinal Matrix	brain
10	chr1:166032800-166035000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr1:166033000-166034400	Enhancers	Psoas Muscle	Psoas
12	chr1:166033000-166034400	Enhancers	Right Atrium	heart
13	chr1:166033000-166034400	Enhancers	Right Ventricle	heart
14	chr1:166033000-166034600	Enhancers	Left Ventricle	heart
15	chr1:166033000-166034600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:166033200-166034000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:166033400-166033800	Weak transcription	Pancreas	Pancrea
18	chr1:166033400-166035200	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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