Variant report

Variant	rs12079541
Chromosome Location	chr1:166052319-166052320
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10082085	0.90[AMR][1000 genomes]
rs10436882	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10918343	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10918346	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12070881	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12081735	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58453027	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024189	0.81[AMR][1000 genomes]
rs73033908	0.90[AMR][1000 genomes]
rs73033912	0.90[AMR][1000 genomes]
rs73033931	0.90[AMR][1000 genomes]
rs73033937	0.90[AMR][1000 genomes]
rs73033944	0.90[AMR][1000 genomes]
rs73041247	0.89[AMR][1000 genomes]
rs7540985	0.90[AMR][1000 genomes]
rs7541117	0.90[AMR][1000 genomes]
rs7541280	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166039200-166055400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:166049000-166067200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:166050600-166053000	Weak transcription	GM12878-XiMat	blood
4	chr1:166050600-166055400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:166050800-166052600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:166051000-166052600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:166051000-166059400	Weak transcription	Right Atrium	heart
8	chr1:166051000-166059600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:166051200-166053200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:166051200-166053800	Weak transcription	Spleen	Spleen
11	chr1:166051200-166055400	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:166051200-166057000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:166051200-166058800	Weak transcription	Adipose Nuclei	Adipose
14	chr1:166051200-166059200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:166051200-166060000	Weak transcription	Right Ventricle	heart
16	chr1:166051400-166054800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr1:166051400-166068400	Weak transcription	Pancreas	Pancrea
18	chr1:166051600-166064400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:166051800-166053600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr1:166051800-166058600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:166052200-166053600	Weak transcription	Primary T cells fromperipheralblood	blood

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