Variant report

Variant	rs12070881
Chromosome Location	chr1:166082680-166082681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10436882	1.00[ASW][hapmap];0.89[AMR][1000 genomes]
rs10918343	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10918346	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060595	0.87[AMR][1000 genomes]
rs12079541	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12081735	1.00[ASW][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12239225	0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12239227	0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13375131	0.89[AMR][1000 genomes]
rs57918730	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58453027	0.89[AMR][1000 genomes]
rs61339873	0.87[AMR][1000 genomes]
rs73041247	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041258	0.89[AMR][1000 genomes]
rs7541280	0.87[ASW][hapmap];0.92[MKK][hapmap]
rs919675	0.89[AMR][1000 genomes]
rs9651029	0.94[YRI][hapmap];0.87[AMR][1000 genomes]
rs9651038	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166080400-166087000	Weak transcription	Left Ventricle	heart
2	chr1:166080800-166104200	Weak transcription	Pancreas	Pancrea
3	chr1:166082600-166083000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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