Variant report

Variant	rs61339873
Chromosome Location	chr1:166155954-166155955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10918343	0.87[AMR][1000 genomes]
rs10918346	0.87[AMR][1000 genomes]
rs12060595	1.00[AMR][1000 genomes]
rs12070881	0.87[AMR][1000 genomes]
rs12239225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12239227	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57918730	1.00[AMR][1000 genomes]
rs73034656	0.87[AMR][1000 genomes]
rs73041247	0.87[AMR][1000 genomes]
rs74118994	0.85[AMR][1000 genomes]
rs9651029	1.00[AMR][1000 genomes]
rs9651038	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166147600-166165800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:166152200-166156800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:166154600-166158200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:166155200-166158200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:166155400-166158200	Weak transcription	HMEC	breast
6	chr1:166155400-166158400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links