Variant report

Variant	rs9651029
Chromosome Location	chr1:166129500-166129501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10918343	0.87[AMR][1000 genomes]
rs10918346	0.94[YRI][hapmap];0.87[AMR][1000 genomes]
rs10918382	0.83[AFR][1000 genomes]
rs12060595	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs12070881	0.94[YRI][hapmap];0.87[AMR][1000 genomes]
rs12239225	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12239227	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57918730	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61339873	1.00[AMR][1000 genomes]
rs73034656	0.87[AMR][1000 genomes]
rs73041247	0.87[AMR][1000 genomes]
rs74118994	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9651038	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166123800-166134000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:166127200-166130400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:166127200-166134000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:166128400-166129600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:166128400-166134000	Weak transcription	Right Ventricle	heart
6	chr1:166128800-166130800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:166129400-166129600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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