Variant report

Variant	rs10918346
Chromosome Location	chr1:166065914-166065915
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10436882	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10918343	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060595	0.87[AMR][1000 genomes]
rs12070881	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079541	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12081735	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12239225	0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12239227	0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13375131	0.89[AMR][1000 genomes]
rs57918730	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58453027	0.89[AMR][1000 genomes]
rs61339873	0.87[AMR][1000 genomes]
rs73041247	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041258	0.89[AMR][1000 genomes]
rs919675	0.89[AMR][1000 genomes]
rs9651029	0.94[YRI][hapmap];0.87[AMR][1000 genomes]
rs9651038	0.94[YRI][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166049000-166067200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:166051400-166068400	Weak transcription	Pancreas	Pancrea
3	chr1:166056000-166066200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:166058000-166066400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links