Variant report

Variant	rs13375131
Chromosome Location	chr1:166092425-166092426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10918343	0.89[AMR][1000 genomes]
rs10918346	0.89[AMR][1000 genomes]
rs12070881	0.89[AMR][1000 genomes]
rs73034656	0.89[AMR][1000 genomes]
rs73041247	0.89[AMR][1000 genomes]
rs73041258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs919675	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166080800-166104200	Weak transcription	Pancreas	Pancrea
2	chr1:166083000-166110800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:166085400-166093200	Weak transcription	Spleen	Spleen
4	chr1:166089200-166097600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:166091800-166092600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:166091800-166092600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:166091800-166092600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:166091800-166092800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:166091800-166093000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:166092000-166092800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:166092000-166093200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:166092200-166092600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:166092200-166092800	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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