Variant report

Variant	rs58453027
Chromosome Location	chr1:166051071-166051072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10082085	0.90[AMR][1000 genomes]
rs10436882	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10918343	0.89[AMR][1000 genomes]
rs10918346	0.89[AMR][1000 genomes]
rs12070881	0.89[AMR][1000 genomes]
rs12079541	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12081735	1.00[AMR][1000 genomes]
rs73024189	0.81[AMR][1000 genomes]
rs73033908	0.90[AMR][1000 genomes]
rs73033912	0.90[AMR][1000 genomes]
rs73033931	0.90[AMR][1000 genomes]
rs73033937	0.90[AMR][1000 genomes]
rs73033944	0.90[AMR][1000 genomes]
rs73041247	0.89[AMR][1000 genomes]
rs7540985	0.90[AMR][1000 genomes]
rs7541117	0.90[AMR][1000 genomes]
rs7541280	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166039200-166055400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:166049000-166067200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:166049400-166051200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:166049400-166051800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:166049600-166051200	Enhancers	Primary T cells from cord blood	blood
6	chr1:166049600-166051200	Enhancers	Adipose Nuclei	Adipose
7	chr1:166049600-166051800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:166049800-166051200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:166049800-166051200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:166049800-166051200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr1:166049800-166052000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr1:166050000-166051200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:166050000-166051200	Enhancers	Duodenum Mucosa	Duodenum
14	chr1:166050000-166051200	Enhancers	Fetal Muscle Leg	muscle
15	chr1:166050000-166051200	Enhancers	Right Ventricle	heart
16	chr1:166050000-166051200	Enhancers	Spleen	Spleen
17	chr1:166050000-166051400	Enhancers	Fetal Muscle Trunk	muscle
18	chr1:166050000-166051400	Enhancers	Lung	lung
19	chr1:166050000-166051600	Enhancers	Stomach Smooth Muscle	stomach
20	chr1:166050000-166052200	Enhancers	Primary T cells fromperipheralblood	blood
21	chr1:166050600-166051200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:166050600-166053000	Weak transcription	GM12878-XiMat	blood
23	chr1:166050600-166055400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:166050800-166051200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr1:166050800-166051400	Enhancers	Pancreas	Pancrea
26	chr1:166050800-166052600	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr1:166051000-166051600	Enhancers	Dnd41	blood
28	chr1:166051000-166052600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr1:166051000-166059400	Weak transcription	Right Atrium	heart
30	chr1:166051000-166059600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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