Variant report

Variant	rs10800192
Chromosome Location	chr1:166089723-166089724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1002160	0.92[EUR][1000 genomes]
rs10753704	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10753709	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10753710	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10800184	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10800186	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10800187	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10800191	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10800193	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10918344	0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10918345	0.85[EUR][1000 genomes]
rs10918347	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10918348	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10918349	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10918362	0.91[EUR][1000 genomes]
rs10918367	0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10918368	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10918370	0.93[EUR][1000 genomes]
rs10918371	0.92[EUR][1000 genomes]
rs10918372	0.92[EUR][1000 genomes]
rs10918373	0.91[EUR][1000 genomes]
rs10918375	0.91[EUR][1000 genomes]
rs11487531	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11590461	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12030010	0.92[EUR][1000 genomes]
rs12065238	0.92[EUR][1000 genomes]
rs12090916	0.86[EUR][1000 genomes]
rs12097635	0.92[EUR][1000 genomes]
rs12123839	0.80[YRI][hapmap];0.92[EUR][1000 genomes]
rs12145793	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12401942	1.00[CEU][hapmap]
rs12406386	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12407378	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12410486	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12756802	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1376660	1.00[JPT][hapmap]
rs16856607	0.89[YRI][hapmap]
rs16856624	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16856639	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs16856659	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1993106	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2163629	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs28718625	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34402000	0.92[EUR][1000 genomes]
rs4072242	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4072267	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4147071	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4147482	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4339838	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4542195	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4657519	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4657520	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4657521	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4657522	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55704823	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56044172	0.92[EUR][1000 genomes]
rs59317225	0.92[EUR][1000 genomes]
rs59384574	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6426970	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6659245	0.92[EUR][1000 genomes]
rs6663205	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs6664520	0.89[EUR][1000 genomes]
rs6672329	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6676350	1.00[JPT][hapmap]
rs6692196	0.91[EUR][1000 genomes]
rs6700318	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6700427	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72703921	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs731264	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7521995	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7523055	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7530896	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7551664	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7553768	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs919674	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs973381	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs987131	0.81[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166080800-166104200	Weak transcription	Pancreas	Pancrea
2	chr1:166083000-166110800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:166085400-166093200	Weak transcription	Spleen	Spleen
4	chr1:166088200-166091400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:166089200-166092200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:166089200-166097600	Weak transcription	H9 Cell Line	embryonic stem cell

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