Variant report

Variant	rs4657519
Chromosome Location	chr1:166096242-166096243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10800192	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10800195	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800196	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918380	1.00[ASN][1000 genomes]
rs12401942	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12404396	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12406386	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12406413	1.00[ASN][1000 genomes]
rs12407378	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12410486	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12410779	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1376660	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1451605	0.82[ASN][1000 genomes]
rs1551178	0.82[ASN][1000 genomes]
rs16856624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856639	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856659	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856712	0.84[ASN][1000 genomes]
rs1993106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116525	0.82[ASN][1000 genomes]
rs2163629	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2310777	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4072243	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4072267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4656479	0.81[MKK][hapmap]
rs4657521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4657523	0.81[MKK][hapmap]
rs4657524	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6663116	1.00[ASN][1000 genomes]
rs6663205	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6672329	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6676350	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6684459	1.00[LWK][hapmap];0.97[MKK][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes]
rs73034629	1.00[ASN][1000 genomes]
rs73034634	1.00[ASN][1000 genomes]
rs73041277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046941	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046946	1.00[ASN][1000 genomes]
rs73046949	0.96[ASN][1000 genomes]
rs73046954	1.00[ASN][1000 genomes]
rs74118982	1.00[ASN][1000 genomes]
rs74118983	1.00[ASN][1000 genomes]
rs74118984	1.00[ASN][1000 genomes]
rs7523055	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7551664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891788	0.94[YRI][hapmap];0.95[AFR][1000 genomes]
rs891789	1.00[LWK][hapmap];0.97[MKK][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes]
rs970519	1.00[ASN][1000 genomes]
rs973381	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987131	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166080800-166104200	Weak transcription	Pancreas	Pancrea
2	chr1:166083000-166110800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:166089200-166097600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:166092600-166097600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:166093200-166102400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:166096200-166096400	Enhancers	Skeletal Muscle Female	skeletal muscle

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