Variant report

Variant	rs12404396
Chromosome Location	chr1:166097664-166097665
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166091693..166093457-chr1:166097093..166099066,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10800195	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10800196	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10918380	0.94[ASN][1000 genomes]
rs12401942	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12406386	0.92[ASN][1000 genomes]
rs12406413	0.94[ASN][1000 genomes]
rs12407378	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12410486	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12410779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1376660	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16856624	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16856639	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16856659	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16856876	1.00[AFR][1000 genomes]
rs1901356	1.00[AFR][1000 genomes]
rs1993106	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2163629	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4072243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4072267	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4657519	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4657521	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4657524	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6663116	0.94[ASN][1000 genomes]
rs6663205	0.94[ASN][1000 genomes]
rs6672329	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6676350	0.94[ASN][1000 genomes]
rs73034629	0.94[ASN][1000 genomes]
rs73034634	0.94[ASN][1000 genomes]
rs73041277	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73046941	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73046946	0.94[ASN][1000 genomes]
rs73046949	0.91[ASN][1000 genomes]
rs73046954	0.94[ASN][1000 genomes]
rs74118982	0.94[ASN][1000 genomes]
rs74118983	0.94[ASN][1000 genomes]
rs74118984	0.94[ASN][1000 genomes]
rs7523055	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7551664	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs966152	1.00[AFR][1000 genomes]
rs970519	0.94[ASN][1000 genomes]
rs973381	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs987131	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166080800-166104200	Weak transcription	Pancreas	Pancrea
2	chr1:166083000-166110800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:166093200-166102400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:166096400-166102200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:166097200-166099200	Weak transcription	Gastric	stomach
6	chr1:166097600-166098000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr1:166097600-166098000	Enhancers	HUES48 Cell Line	embryonic stem cell

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