Variant report

Variant	rs10800196
Chromosome Location	chr1:166109126-166109127
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10800195	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918380	1.00[ASN][1000 genomes]
rs12026246	0.96[AFR][1000 genomes]
rs12401942	0.93[ASN][1000 genomes]
rs12404396	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12406386	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12406413	1.00[ASN][1000 genomes]
rs12407378	1.00[ASN][1000 genomes]
rs12410486	1.00[ASN][1000 genomes]
rs12410779	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1376660	1.00[ASN][1000 genomes]
rs1451605	0.82[ASN][1000 genomes]
rs1551178	0.82[ASN][1000 genomes]
rs16856624	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856639	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856659	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856712	0.84[ASN][1000 genomes]
rs1993106	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116525	0.82[ASN][1000 genomes]
rs2163629	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4072243	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4072267	0.87[ASN][1000 genomes]
rs4656479	0.96[AFR][1000 genomes]
rs4657519	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4657521	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4657523	0.96[AFR][1000 genomes]
rs4657524	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6663116	1.00[ASN][1000 genomes]
rs6663205	1.00[ASN][1000 genomes]
rs6672329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6676350	1.00[ASN][1000 genomes]
rs73034629	1.00[ASN][1000 genomes]
rs73034634	1.00[ASN][1000 genomes]
rs73041277	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046941	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046946	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73046949	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73046954	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74118982	1.00[ASN][1000 genomes]
rs74118983	1.00[ASN][1000 genomes]
rs74118984	1.00[ASN][1000 genomes]
rs7523055	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7551664	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970519	1.00[ASN][1000 genomes]
rs973381	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987131	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166083000-166110800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:166106200-166112400	Weak transcription	Psoas Muscle	Psoas
3	chr1:166106200-166119000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:166106600-166123200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:166109000-166109200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:166109000-166109600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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