Variant report

Variant	rs74118982
Chromosome Location	chr1:166133484-166133485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10800195	1.00[ASN][1000 genomes]
rs10800196	1.00[ASN][1000 genomes]
rs10918380	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12401942	0.93[ASN][1000 genomes]
rs12404396	0.94[ASN][1000 genomes]
rs12406386	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12406413	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407378	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12410486	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12410779	1.00[ASN][1000 genomes]
rs1376660	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1451605	0.82[ASN][1000 genomes]
rs1551178	0.82[ASN][1000 genomes]
rs16856624	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16856639	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16856659	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16856712	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1993106	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2116525	0.82[ASN][1000 genomes]
rs2163629	1.00[ASN][1000 genomes]
rs4072243	1.00[ASN][1000 genomes]
rs4072267	0.87[ASN][1000 genomes]
rs4657519	1.00[ASN][1000 genomes]
rs4657521	1.00[ASN][1000 genomes]
rs4657524	0.96[ASN][1000 genomes]
rs6663116	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672329	1.00[ASN][1000 genomes]
rs6676350	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73034629	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73034634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73034636	0.95[AFR][1000 genomes]
rs73041277	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73046941	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73046946	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046949	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73046954	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046970	0.95[AFR][1000 genomes]
rs74118983	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74118984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523055	0.98[ASN][1000 genomes]
rs7551664	1.00[ASN][1000 genomes]
rs970519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973381	1.00[ASN][1000 genomes]
rs987131	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166123800-166134000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:166127200-166134000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:166128400-166134000	Weak transcription	Right Ventricle	heart
4	chr1:166131000-166134000	Weak transcription	Brain Anterior Caudate	brain
5	chr1:166132400-166135200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:166133400-166133600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:166133400-166133600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
8	chr1:166133400-166134000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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