Variant report

Variant	rs4072267
Chromosome Location	chr1:166055741-166055742
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10800192	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10800195	0.87[ASN][1000 genomes]
rs10800196	0.87[ASN][1000 genomes]
rs10918380	0.87[ASN][1000 genomes]
rs12401942	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12404396	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12406386	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12406413	0.87[ASN][1000 genomes]
rs12407378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12410486	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12410779	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1376660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16856624	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16856639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16856659	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1993106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2163629	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4072243	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4657519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4657521	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4657524	0.84[ASN][1000 genomes]
rs6663116	0.87[ASN][1000 genomes]
rs6663205	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6672329	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6676350	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs73034629	0.87[ASN][1000 genomes]
rs73034634	0.87[ASN][1000 genomes]
rs73041277	0.87[ASN][1000 genomes]
rs73046941	0.87[ASN][1000 genomes]
rs73046946	0.87[ASN][1000 genomes]
rs73046949	0.84[ASN][1000 genomes]
rs73046954	0.87[ASN][1000 genomes]
rs74118982	0.87[ASN][1000 genomes]
rs74118983	0.87[ASN][1000 genomes]
rs74118984	0.87[ASN][1000 genomes]
rs7523055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7551664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs970519	0.87[ASN][1000 genomes]
rs973381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs987131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166049000-166067200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:166051000-166059400	Weak transcription	Right Atrium	heart
3	chr1:166051000-166059600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:166051200-166057000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:166051200-166058800	Weak transcription	Adipose Nuclei	Adipose
6	chr1:166051200-166059200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:166051200-166060000	Weak transcription	Right Ventricle	heart
8	chr1:166051400-166068400	Weak transcription	Pancreas	Pancrea
9	chr1:166051600-166064400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:166051800-166058600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:166053400-166059000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:166053600-166059000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:166054000-166058800	Weak transcription	GM12878-XiMat	blood
14	chr1:166054200-166058600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:166054600-166056000	Enhancers	HepG2	liver
16	chr1:166054600-166059000	Weak transcription	Spleen	Spleen
17	chr1:166055000-166059000	Weak transcription	Left Ventricle	heart
18	chr1:166055400-166056000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr1:166055400-166056000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:166055400-166056000	Enhancers	Fetal Muscle Trunk	muscle
21	chr1:166055400-166056200	Enhancers	Fetal Muscle Leg	muscle
22	chr1:166055600-166056200	Enhancers	Lung	lung
23	chr1:166055600-166064600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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