Variant report
| Variant | rs966152 |
|---|---|
| Chromosome Location | chr1:166255486-166255487 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12404396 | 1.00[AFR][1000 genomes] |
| rs12407378 | 1.00[AFR][1000 genomes] |
| rs12410486 | 1.00[AFR][1000 genomes] |
| rs12410779 | 1.00[AFR][1000 genomes] |
| rs1376660 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes] |
| rs1451605 | 0.89[EUR][1000 genomes] |
| rs1551178 | 0.89[EUR][1000 genomes] |
| rs16856624 | 1.00[AFR][1000 genomes] |
| rs16856639 | 1.00[AFR][1000 genomes] |
| rs16856659 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes] |
| rs16856712 | 0.83[AMR][1000 genomes] |
| rs16856876 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16857044 | 1.00[EUR][1000 genomes] |
| rs1901356 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1993106 | 1.00[AFR][1000 genomes] |
| rs2116525 | 0.89[EUR][1000 genomes] |
| rs4072243 | 1.00[AFR][1000 genomes] |
| rs4256790 | 0.89[EUR][1000 genomes] |
| rs4311866 | 0.89[EUR][1000 genomes] |
| rs4422983 | 1.00[EUR][1000 genomes] |
| rs9970008 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916491 | chr1:166000783-166948513 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | esv3332610 | chr1:166111288-166282689 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:166252800-166260600 | Weak transcription | Left Ventricle | heart |
