Variant report

Variant	rs4256790
Chromosome Location	chr1:166320169-166320170
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16856876	0.89[EUR][1000 genomes]
rs16857044	0.89[EUR][1000 genomes]
rs4311866	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4422983	0.89[EUR][1000 genomes]
rs966152	0.89[EUR][1000 genomes]
rs9970008	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166319600-166320400	Enhancers	Brain Germinal Matrix	brain
2	chr1:166319800-166320400	Enhancers	Fetal Brain Female	brain
3	chr1:166319800-166321200	Enhancers	Psoas Muscle	Psoas
4	chr1:166320000-166320200	Enhancers	Brain Anterior Caudate	brain
5	chr1:166320000-166320600	Weak transcription	Adipose Nuclei	Adipose
6	chr1:166320000-166321200	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links