Variant report

Variant	rs9970008
Chromosome Location	chr1:166305651-166305652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10800212	1.00[TSI][hapmap]
rs16856639	1.00[TSI][hapmap]
rs16856876	0.89[EUR][1000 genomes]
rs16857044	0.89[EUR][1000 genomes]
rs4256790	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4311866	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4422983	0.89[EUR][1000 genomes]
rs6676350	1.00[TSI][hapmap]
rs966152	0.89[EUR][1000 genomes]
rs973381	1.00[TSI][hapmap]
rs987131	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166304800-166306200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:166305000-166306000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:166305200-166305800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:166305200-166306800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr1:166305400-166305800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:166305600-166306000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr1:166305600-166306200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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