Variant report

Variant	rs891789
Chromosome Location	chr1:166091549-166091550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10918337	1.00[MEX][hapmap]
rs12026246	0.85[AMR][1000 genomes]
rs16855209	1.00[MEX][hapmap]
rs16856613	1.00[MEX][hapmap]
rs4656479	0.89[ASW][hapmap];0.84[MKK][hapmap];0.85[AMR][1000 genomes]
rs4657519	1.00[LWK][hapmap];0.97[MKK][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes]
rs4657523	0.89[ASW][hapmap];0.84[MKK][hapmap];0.85[AMR][1000 genomes]
rs6684459	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs891788	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166080800-166104200	Weak transcription	Pancreas	Pancrea
2	chr1:166083000-166110800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:166085400-166093200	Weak transcription	Spleen	Spleen
4	chr1:166089200-166092200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:166089200-166097600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:166091200-166091800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:166091400-166091600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links