Variant report

Variant	rs34402000
Chromosome Location	chr1:166082895-166082896
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1002160	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10753704	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10753709	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10753710	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10800183	0.85[EUR][1000 genomes]
rs10800184	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10800186	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10800187	0.90[EUR][1000 genomes]
rs10800191	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10800192	0.92[EUR][1000 genomes]
rs10800193	0.93[EUR][1000 genomes]
rs10918344	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10918345	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10918347	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10918348	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10918349	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10918362	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10918367	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10918368	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10918370	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10918371	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10918372	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10918373	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10918375	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11487531	0.90[EUR][1000 genomes]
rs11590461	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12030010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12065238	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12078862	0.83[EUR][1000 genomes]
rs12090916	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12097635	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12123839	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12132672	0.84[EUR][1000 genomes]
rs12145793	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12756802	0.93[EUR][1000 genomes]
rs28718625	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4072242	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4147071	0.93[EUR][1000 genomes]
rs4147482	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4339838	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4542195	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4657520	0.93[EUR][1000 genomes]
rs4657522	0.92[EUR][1000 genomes]
rs55704823	0.90[EUR][1000 genomes]
rs56044172	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59317225	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59384574	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6426970	0.93[EUR][1000 genomes]
rs6659245	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6664520	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6692196	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6700318	0.92[EUR][1000 genomes]
rs6700427	0.90[EUR][1000 genomes]
rs72703921	0.88[EUR][1000 genomes]
rs731264	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7521995	0.93[EUR][1000 genomes]
rs7530896	0.93[EUR][1000 genomes]
rs7553768	0.93[EUR][1000 genomes]
rs919674	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166080400-166087000	Weak transcription	Left Ventricle	heart
2	chr1:166080800-166104200	Weak transcription	Pancreas	Pancrea
3	chr1:166082600-166083000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links