Variant report

Variant	rs10918362
Chromosome Location	chr11:31973988-31973989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1002160	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10753704	0.91[EUR][1000 genomes]
rs10753709	0.92[EUR][1000 genomes]
rs10753710	0.92[EUR][1000 genomes]
rs10800183	0.86[EUR][1000 genomes]
rs10800184	0.88[EUR][1000 genomes]
rs10800186	0.91[EUR][1000 genomes]
rs10800187	0.92[EUR][1000 genomes]
rs10800191	0.92[EUR][1000 genomes]
rs10800192	0.91[EUR][1000 genomes]
rs10800193	0.92[EUR][1000 genomes]
rs10918344	0.88[EUR][1000 genomes]
rs10918345	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10918347	0.86[EUR][1000 genomes]
rs10918348	0.92[EUR][1000 genomes]
rs10918349	0.92[EUR][1000 genomes]
rs10918367	0.92[EUR][1000 genomes]
rs10918368	0.92[EUR][1000 genomes]
rs10918370	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10918371	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10918372	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10918373	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10918375	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11487531	0.92[EUR][1000 genomes]
rs11590461	0.92[EUR][1000 genomes]
rs12030010	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12065238	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12078862	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12090916	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12097635	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12123839	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12132672	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12145793	0.86[EUR][1000 genomes]
rs12756802	0.92[EUR][1000 genomes]
rs28718625	0.92[EUR][1000 genomes]
rs34402000	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4072242	0.92[EUR][1000 genomes]
rs4147071	0.92[EUR][1000 genomes]
rs4147482	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4339838	0.92[EUR][1000 genomes]
rs4542195	0.92[EUR][1000 genomes]
rs4657520	0.92[EUR][1000 genomes]
rs4657522	0.91[EUR][1000 genomes]
rs55704823	0.92[EUR][1000 genomes]
rs56044172	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59317225	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59384574	0.92[EUR][1000 genomes]
rs6426970	0.92[EUR][1000 genomes]
rs6659245	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6664520	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6692196	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6700318	0.93[EUR][1000 genomes]
rs6700427	0.92[EUR][1000 genomes]
rs72703921	0.90[EUR][1000 genomes]
rs731264	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7521995	0.92[EUR][1000 genomes]
rs7530896	0.92[EUR][1000 genomes]
rs7553768	0.92[EUR][1000 genomes]
rs919674	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529260	chr11:31656451-32109849	Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1052619	chr11:31747371-32063349	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540986	chr11:31747371-32063349	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv529227	chr11:31802384-32109849	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:31965000-31979200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:31973800-31974000	Enhancers	GM12878-XiMat	blood

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