Variant report

Variant	rs7532120
Chromosome Location	chr1:157981706-157981707
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:157980406..157983368-chr1:157988556..157991541,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11580742	0.91[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs11585913	0.91[CEU][hapmap]
rs1929845	0.82[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3892165	0.91[CEU][hapmap]
rs6680700	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157965800-157983200	Weak transcription	Dnd41	blood
2	chr1:157968800-157982200	Enhancers	Placenta	Placenta
3	chr1:157969000-157988000	Weak transcription	Psoas Muscle	Psoas
4	chr1:157969800-157982200	Enhancers	Fetal Heart	heart
5	chr1:157975000-157981800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:157975400-157982000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:157975400-157996800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:157976000-157981800	Enhancers	Right Atrium	heart
9	chr1:157976200-157981800	Enhancers	Fetal Muscle Trunk	muscle
10	chr1:157976200-157982000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:157976200-157982000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr1:157976200-157982600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:157976200-157982800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:157976400-157981800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr1:157976400-157981800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:157976400-157982000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr1:157976600-157982400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr1:157976800-157981800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:157977000-157982000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:157977000-157983800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:157977200-157981800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr1:157977200-157982000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr1:157977400-157981800	Enhancers	Esophagus	oesophagus
24	chr1:157977400-157982200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:157977400-157982200	Enhancers	Fetal Intestine Large	intestine
26	chr1:157978000-157982200	Enhancers	Aorta	Aorta
27	chr1:157978000-157982600	Enhancers	Fetal Kidney	kidney
28	chr1:157978600-157983200	Weak transcription	Small Intestine	intestine
29	chr1:157978800-157982000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:157979200-157982000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:157979200-157983200	Weak transcription	Brain Germinal Matrix	brain
32	chr1:157979400-157981800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:157979800-157981800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:157979800-157981800	Flanking Active TSS	Rectal Smooth Muscle	rectum
35	chr1:157979800-157983400	Weak transcription	Thymus	Thymus
36	chr1:157979800-157991000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr1:157980400-157984600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr1:157980600-157982400	Enhancers	Adipose Nuclei	Adipose
39	chr1:157980600-157983200	Weak transcription	Fetal Brain Male	brain
40	chr1:157980800-157981800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr1:157980800-157981800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:157981000-157981800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:157981000-157981800	Enhancers	Colonic Mucosa	Colon
44	chr1:157981000-157981800	Genic enhancers	Fetal Muscle Leg	muscle
45	chr1:157981000-157981800	Enhancers	Left Ventricle	heart
46	chr1:157981000-157981800	Enhancers	Lung	lung
47	chr1:157981000-157981800	Enhancers	Hela-S3	cervix
48	chr1:157981000-157982200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:157981000-157982400	Enhancers	Fetal Stomach	stomach
50	chr1:157981000-157983200	Genic enhancers	NHEK	skin

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