Variant report

Variant	rs6680700
Chromosome Location	chr1:157979035-157979036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:157978271..157979857-chr1:157979994..157981578,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11580742	1.00[CEU][hapmap]
rs11585913	1.00[CEU][hapmap]
rs1317324	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1929845	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs3892165	1.00[CEU][hapmap]
rs6680584	1.00[ASN][1000 genomes]
rs6681075	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7532120	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157965200-157979400	Weak transcription	Thymus	Thymus
2	chr1:157965800-157983200	Weak transcription	Dnd41	blood
3	chr1:157966400-157979800	Enhancers	Ovary	ovary
4	chr1:157966600-157979600	Enhancers	Adipose Nuclei	Adipose
5	chr1:157968800-157982200	Enhancers	Placenta	Placenta
6	chr1:157969000-157988000	Weak transcription	Psoas Muscle	Psoas
7	chr1:157969800-157979200	Enhancers	Colon Smooth Muscle	Colon
8	chr1:157969800-157982200	Enhancers	Fetal Heart	heart
9	chr1:157970800-157980200	Enhancers	Fetal Lung	lung
10	chr1:157973600-157979200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:157973600-157980000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:157975000-157981800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:157975200-157980600	Enhancers	Left Ventricle	heart
14	chr1:157975200-157980600	Enhancers	Lung	lung
15	chr1:157975400-157981600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:157975400-157982000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:157975400-157996800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:157975600-157979800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr1:157975800-157980600	Enhancers	Fetal Brain Male	brain
20	chr1:157976000-157979800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:157976000-157981600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:157976000-157981800	Enhancers	Right Atrium	heart
23	chr1:157976200-157979400	Enhancers	NH-A	brain
24	chr1:157976200-157981800	Enhancers	Fetal Muscle Trunk	muscle
25	chr1:157976200-157982000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr1:157976200-157982000	Enhancers	Placenta Amnion	Placenta Amnion
27	chr1:157976200-157982600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr1:157976200-157982800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:157976400-157979600	Enhancers	HMEC	breast
30	chr1:157976400-157979800	Enhancers	Fetal Brain Female	brain
31	chr1:157976400-157981400	Genic enhancers	Fetal Intestine Small	intestine
32	chr1:157976400-157981800	Enhancers	H1 Cell Line	embryonic stem cell
33	chr1:157976400-157981800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr1:157976400-157982000	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr1:157976600-157980400	Enhancers	Fetal Muscle Leg	muscle
36	chr1:157976600-157982400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr1:157976800-157979600	Enhancers	HUVEC	blood vessel
38	chr1:157976800-157980600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr1:157976800-157981600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr1:157976800-157981800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:157977000-157982000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:157977000-157983800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:157977200-157979200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr1:157977200-157981400	Enhancers	H9 Cell Line	embryonic stem cell
45	chr1:157977200-157981800	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr1:157977200-157982000	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr1:157977400-157979400	Enhancers	NHLF	lung
48	chr1:157977400-157980000	Enhancers	Duodenum Mucosa	Duodenum
49	chr1:157977400-157981800	Enhancers	Esophagus	oesophagus
50	chr1:157977400-157982200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links