Variant report

Variant	rs7534852
Chromosome Location	chr1:161979090-161979091
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161976766..161979689-chr1:161981047..161983365,4	K562	blood:
2	chr1:161978649..161980514-chr1:161983821..161985651,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10218569	0.96[AFR][1000 genomes]
rs1337065	0.88[AFR][1000 genomes]
rs4233383	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs4657135	0.88[AFR][1000 genomes]
rs6427646	0.88[AFR][1000 genomes]
rs6669525	0.85[YRI][hapmap];0.92[AFR][1000 genomes]
rs6699250	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6699368	0.92[YRI][hapmap]
rs7554169	0.87[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv464206	chr1:161798239-162067447	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv470744	chr1:161798239-162067447	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv548077	chr1:161798239-162067447	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1007108	chr1:161925814-162002917	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv831747	chr1:161926367-162103311	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv548078	chr1:161941219-161980502	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161965000-161980800	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:161965200-161984600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:161968400-161979800	Weak transcription	Ovary	ovary
4	chr1:161970200-161981200	Weak transcription	Aorta	Aorta
5	chr1:161971400-161982600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:161973200-161980600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:161973600-161983200	Genic enhancers	Fetal Muscle Leg	muscle
8	chr1:161974000-161980000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:161974600-161979200	Weak transcription	Psoas Muscle	Psoas
10	chr1:161974600-161982200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:161974800-161979400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:161974800-161982800	Weak transcription	Adipose Nuclei	Adipose
13	chr1:161974800-161987200	Weak transcription	NHLF	lung
14	chr1:161975200-161988600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:161976200-161982000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:161977200-161979600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:161977600-161980000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:161977600-161980600	Strong transcription	Fetal Stomach	stomach
19	chr1:161978200-161979200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr1:161978400-161979400	Weak transcription	Left Ventricle	heart
21	chr1:161978400-161979400	Weak transcription	Right Atrium	heart
22	chr1:161978400-161979400	Weak transcription	Right Ventricle	heart
23	chr1:161978400-161979800	Enhancers	Brain Angular Gyrus	brain
24	chr1:161978400-161981400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr1:161978600-161979400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:161978600-161979400	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr1:161978600-161979800	Enhancers	Brain Cingulate Gyrus	brain
28	chr1:161978600-161980200	Enhancers	Brain Hippocampus Middle	brain
29	chr1:161978800-161979200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr1:161978800-161979200	Enhancers	NHDF-Ad	bronchial
31	chr1:161978800-161979800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
32	chr1:161978800-161979800	Enhancers	Brain Substantia Nigra	brain
33	chr1:161978800-161979800	Enhancers	HSMM	muscle
34	chr1:161978800-161982400	Genic enhancers	Fetal Muscle Trunk	muscle
35	chr1:161978800-161982800	Weak transcription	Fetal Intestine Small	intestine
36	chr1:161979000-161979200	Enhancers	Gastric	stomach
37	chr1:161979000-161979400	Genic enhancers	HSMMtube	muscle
38	chr1:161979000-161980000	Enhancers	Brain Anterior Caudate	brain
39	chr1:161979000-161980200	Enhancers	Brain Germinal Matrix	brain
40	chr1:161979000-161983800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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