Variant report

Variant	rs7554169
Chromosome Location	chr1:161987914-161987915
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10218569	0.88[AFR][1000 genomes]
rs1337065	0.96[AFR][1000 genomes]
rs2499851	0.82[YRI][hapmap]
rs2499853	0.82[YRI][hapmap]
rs4233383	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4657135	0.96[AFR][1000 genomes]
rs6427646	0.96[AFR][1000 genomes]
rs6669525	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6699250	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs7534852	0.87[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv464206	chr1:161798239-162067447	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv470744	chr1:161798239-162067447	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv548077	chr1:161798239-162067447	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1007108	chr1:161925814-162002917	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv831747	chr1:161926367-162103311	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161975200-161988600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:161979200-161993200	Weak transcription	Gastric	stomach
3	chr1:161979600-161988200	Weak transcription	Psoas Muscle	Psoas
4	chr1:161979800-161988200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:161980800-161988800	Weak transcription	Osteobl	bone
6	chr1:161981200-161988400	Weak transcription	Lung	lung
7	chr1:161981400-161989200	Weak transcription	Placenta	Placenta
8	chr1:161981600-161988200	Weak transcription	Aorta	Aorta
9	chr1:161981600-161989000	Weak transcription	Ovary	ovary
10	chr1:161982400-161988400	Strong transcription	Fetal Muscle Trunk	muscle
11	chr1:161982400-161988400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr1:161982600-161989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:161982600-161990600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:161983000-161988000	Weak transcription	Fetal Heart	heart
15	chr1:161983000-161988200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:161983000-161991000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:161983400-161988200	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:161983600-161988400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr1:161983600-161988800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:161983600-161989000	Weak transcription	Brain Angular Gyrus	brain
21	chr1:161983600-161989400	Weak transcription	Adipose Nuclei	Adipose
22	chr1:161985000-161990800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:161985200-161988200	Weak transcription	NH-A	brain
24	chr1:161985200-161990800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:161985200-161990800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr1:161985400-161988200	Weak transcription	Fetal Stomach	stomach
27	chr1:161985400-161988200	Weak transcription	Pancreas	Pancrea
28	chr1:161985600-161988200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr1:161985800-161988200	Strong transcription	Fetal Muscle Leg	muscle
30	chr1:161985800-161990800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr1:161986400-161988400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:161986400-161988600	Weak transcription	HSMMtube	muscle
33	chr1:161986600-161988000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr1:161986600-161988400	Strong transcription	Colon Smooth Muscle	Colon
35	chr1:161986600-161988600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:161986800-161988200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:161986800-161988200	Strong transcription	NHDF-Ad	bronchial
38	chr1:161986800-161988800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr1:161986800-161993000	Weak transcription	Spleen	Spleen
40	chr1:161987400-161988200	Weak transcription	Right Atrium	heart
41	chr1:161987600-161988200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:161987800-161988600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr1:161987800-161988600	Weak transcription	NHLF	lung
44	chr1:161987800-161988800	Weak transcription	HSMM	muscle

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