Variant report

Variant	rs7538805
Chromosome Location	chr1:209736578-209736579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11119310	0.89[EUR][1000 genomes]
rs11119311	0.89[EUR][1000 genomes]
rs2003682	0.91[EUR][1000 genomes]
rs2076223	0.86[EUR][1000 genomes]
rs2356933	0.90[EUR][1000 genomes]
rs35930464	0.81[ASN][1000 genomes]
rs4433397	0.89[EUR][1000 genomes]
rs4556360	0.89[EUR][1000 genomes]
rs6540544	0.90[EUR][1000 genomes]
rs6683256	0.89[EUR][1000 genomes]
rs713073	0.88[EUR][1000 genomes]
rs713074	0.88[EUR][1000 genomes]
rs736137	0.90[EUR][1000 genomes]
rs7518521	0.89[EUR][1000 genomes]
rs7522730	0.90[EUR][1000 genomes]
rs7528476	0.88[EUR][1000 genomes]
rs926386	0.89[EUR][1000 genomes]
rs9429819	0.86[EUR][1000 genomes]
rs977441	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7538805	CAMK1G	cis	lung	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209726600-209737800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:209726800-209738400	Weak transcription	NHEK	skin
3	chr1:209727000-209737600	Weak transcription	HMEC	breast
4	chr1:209728600-209738200	Weak transcription	Esophagus	oesophagus
5	chr1:209734200-209738200	Weak transcription	Fetal Kidney	kidney
6	chr1:209734400-209740600	Weak transcription	HSMM	muscle
7	chr1:209735800-209739000	Weak transcription	Fetal Brain Male	brain
8	chr1:209736200-209738200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:209736400-209738400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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