Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209767901..209769876-chr1:209773367..209775304,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11119310	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11119311	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2003682	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2076223	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2076224	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2356933	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4433397	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4556360	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6540544	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6683256	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs713073	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs713074	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs736137	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7518521	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7522730	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7528476	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533785	0.84[ASN][1000 genomes]
rs7538805	0.86[EUR][1000 genomes]
rs7541558	0.81[ASN][1000 genomes]
rs926386	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs977441	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209760600-209776400	Weak transcription	Fetal Lung	lung
2	chr1:209764200-209776600	Weak transcription	Ovary	ovary
3	chr1:209764200-209780400	Weak transcription	Fetal Brain Male	brain
4	chr1:209764600-209791200	Weak transcription	Brain Anterior Caudate	brain
5	chr1:209765400-209776800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:209768000-209773800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:209768400-209769800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:209768800-209769600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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