The 2.0 version of rSNPBase

Variant report

Variant rs7540585
Chromosome Location chr1:224253695-224253696
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:29 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:224249600-224255200 Weak transcription K562 blood
2 chr1:224249600-224256000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:224250600-224257800 Enhancers Rectal Mucosa Donor 31 rectum
4 chr1:224251000-224253800 Enhancers Fetal Intestine Large intestine
5 chr1:224251400-224253800 Enhancers Fetal Intestine Small intestine
6 chr1:224251400-224253800 Enhancers Stomach Mucosa stomach
7 chr1:224252000-224254400 Enhancers Rectal Mucosa Donor 29 rectum
8 chr1:224252000-224256200 Enhancers NHDF-Ad bronchial
9 chr1:224252000-224256600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
10 chr1:224252400-224253800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:224252400-224256200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr1:224252600-224254200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr1:224252600-224255000 Weak transcription HSMM muscle
14 chr1:224252600-224255400 Weak transcription Small Intestine intestine
15 chr1:224252600-224256200 Enhancers Muscle Satellite Cultured Cells --
16 chr1:224252600-224258000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr1:224252800-224253800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:224253200-224253800 Enhancers Primary B cells from peripheral blood blood
19 chr1:224253200-224253800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr1:224253200-224253800 Enhancers HMEC breast
21 chr1:224253200-224256000 Enhancers HUVEC blood vessel
22 chr1:224253400-224254400 Enhancers NHLF lung
23 chr1:224253400-224255000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:224253600-224253800 Enhancers Pancreas Pancrea
25 chr1:224253600-224254000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:224253600-224255000 Weak transcription NHEK skin
27 chr1:224253600-224255000 Weak transcription Osteobl bone
28 chr1:224253600-224255400 Weak transcription Duodenum Mucosa Duodenum
29 chr1:224253600-224255400 Weak transcription NH-A brain

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Last update: Aug 31, 2015