Variant report

Variant	rs7541588
Chromosome Location	chr1:93152148-93152149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1003116	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10735781	0.82[EUR][1000 genomes]
rs10874732	0.83[EUR][1000 genomes]
rs10874733	0.82[EUR][1000 genomes]
rs10874736	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11164791	0.83[EUR][1000 genomes]
rs11164796	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12123935	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2107519	0.80[EUR][1000 genomes]
rs2145824	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4294424	0.84[EUR][1000 genomes]
rs4480368	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4847267	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4847432	0.82[EUR][1000 genomes]
rs6604007	0.85[EUR][1000 genomes]
rs6660136	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6675757	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6680578	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7418336	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7530780	0.83[EUR][1000 genomes]
rs7539761	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7546197	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93053600-93166200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:93098400-93205400	Weak transcription	NHLF	lung
3	chr1:93101600-93163600	Weak transcription	Colonic Mucosa	Colon
4	chr1:93102000-93157600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:93120000-93171400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:93121200-93157400	Weak transcription	HUVEC	blood vessel
7	chr1:93121400-93159000	Weak transcription	NH-A	brain
8	chr1:93121400-93162200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:93121600-93166000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr1:93122000-93154800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:93122000-93163200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:93122800-93169400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:93123000-93158600	Weak transcription	HSMMtube	muscle
14	chr1:93123200-93157800	Weak transcription	Brain Anterior Caudate	brain
15	chr1:93123400-93176200	Weak transcription	Psoas Muscle	Psoas
16	chr1:93123600-93153800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:93123600-93154200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:93123600-93155400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:93123600-93155400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:93123600-93155600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:93123600-93158600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:93123600-93160200	Weak transcription	Brain Angular Gyrus	brain
23	chr1:93123600-93160800	Weak transcription	Fetal Brain Male	brain
24	chr1:93123600-93161400	Weak transcription	Esophagus	oesophagus
25	chr1:93123600-93162200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr1:93123600-93162600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:93123600-93166800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:93123600-93178800	Weak transcription	Aorta	Aorta
29	chr1:93123600-93213400	Weak transcription	Gastric	stomach
30	chr1:93123800-93154000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr1:93123800-93154800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr1:93123800-93155400	Weak transcription	Brain Hippocampus Middle	brain
33	chr1:93123800-93160400	Weak transcription	Right Ventricle	heart
34	chr1:93123800-93162400	Weak transcription	Fetal Kidney	kidney
35	chr1:93124000-93160000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr1:93126800-93159200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr1:93132000-93155000	Weak transcription	Lung	lung
38	chr1:93132000-93164600	Weak transcription	Pancreas	Pancrea
39	chr1:93132800-93155000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr1:93136000-93164600	Weak transcription	NHDF-Ad	bronchial
41	chr1:93138000-93160600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr1:93138200-93159000	Weak transcription	Primary B cells from cord blood	blood
43	chr1:93138400-93161600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr1:93138600-93155800	Weak transcription	Fetal Lung	lung
45	chr1:93140800-93155800	Weak transcription	HepG2	liver
46	chr1:93141400-93155000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:93141400-93156200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr1:93142400-93171000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr1:93142600-93154200	Weak transcription	Placenta	Placenta
50	chr1:93142600-93155600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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