Variant report

Variant	rs6604007
Chromosome Location	chr1:93170564-93170565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93168714..93171281-chr1:93175586..93177919,2	K562	blood:

Extended variants
information (count: 211 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:207)

rs_ID	r²[population]
rs1003116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10218670	0.82[CHB][hapmap]
rs1034218	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1034219	0.82[CHB][hapmap]
rs10735779	0.82[CHB][hapmap]
rs10735781	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10735782	0.82[CHB][hapmap]
rs10747445	0.82[CHB][hapmap]
rs10747446	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10747448	0.82[CHB][hapmap]
rs10747449	0.82[CHB][hapmap]
rs10747450	0.82[CHB][hapmap]
rs10782922	0.82[CHB][hapmap]
rs10782936	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10782937	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10782940	0.82[CHB][hapmap]
rs10782941	0.88[EUR][1000 genomes]
rs10782945	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10782946	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10874710	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10874711	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10874715	0.82[CHB][hapmap]
rs10874716	0.82[CHB][hapmap]
rs10874724	0.84[EUR][1000 genomes]
rs10874725	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10874726	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10874727	0.86[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10874728	0.82[CHB][hapmap]
rs10874729	0.82[CHB][hapmap]
rs10874731	0.82[CHB][hapmap]
rs10874732	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10874733	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10874736	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10874738	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10874744	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10874746	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10874747	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs11164778	0.82[CHB][hapmap]
rs11164785	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11164789	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11164791	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11164796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11164804	0.82[CHB][hapmap]
rs11164807	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11164808	0.82[CHB][hapmap]
rs11164810	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12021539	0.84[EUR][1000 genomes]
rs12025792	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12046739	0.82[CHB][hapmap]
rs12123935	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12401423	0.84[EUR][1000 genomes]
rs1337107	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1337109	0.82[CHB][hapmap]
rs1360366	0.83[CEU][hapmap]
rs1408916	0.82[CHB][hapmap]
rs1415294	0.82[CHB][hapmap]
rs1415295	0.82[CHB][hapmap]
rs1535372	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1537498	0.82[CHB][hapmap]
rs1538029	0.82[CHB][hapmap]
rs1556562	0.82[CHB][hapmap]
rs1556564	0.82[CHB][hapmap]
rs1556565	0.82[CHB][hapmap]
rs1570837	0.82[CHB][hapmap]
rs1886682	0.82[CHB][hapmap]
rs1886683	0.82[CHB][hapmap]
rs1886684	0.90[CEU][hapmap]
rs1932965	1.00[CHB][hapmap]
rs1932966	0.82[CHB][hapmap]
rs2027059	0.82[CHB][hapmap]
rs2027060	0.82[CHB][hapmap]
rs2039452	0.82[CHB][hapmap]
rs2050597	0.82[CHB][hapmap]
rs2065915	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs2065916	0.82[CHB][hapmap]
rs2095268	0.82[CHB][hapmap]
rs2107518	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2107519	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2107520	0.82[CHB][hapmap]
rs2107521	0.82[CHB][hapmap]
rs2151577	0.82[CHB][hapmap]
rs2158446	0.82[CHB][hapmap]
rs2180977	0.82[CHB][hapmap]
rs2255717	1.00[JPT][hapmap]
rs2391164	0.82[CHB][hapmap]
rs2391196	0.82[CHB][hapmap]
rs2391197	0.91[EUR][1000 genomes]
rs2391199	0.82[CHB][hapmap]
rs2481710	1.00[JPT][hapmap]
rs2774953	1.00[JPT][hapmap]
rs2811594	1.00[JPT][hapmap]
rs2893217	0.82[CHB][hapmap]
rs35054144	0.82[CHB][hapmap]
rs3790445	0.82[CHB][hapmap]
rs3790446	0.82[CHB][hapmap]
rs3903212	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs3928821	0.82[CHB][hapmap]
rs3936944	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3936945	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs3936946	1.00[CHB][hapmap]
rs4294422	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs4294424	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4480368	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4568842	0.82[CHB][hapmap]
rs4847181	0.82[CHB][hapmap]
rs4847232	0.82[CHB][hapmap]
rs4847247	0.82[CHB][hapmap]
rs4847266	0.82[CHB][hapmap]
rs4847267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4847280	0.82[CHB][hapmap]
rs4847301	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4847305	0.82[CHB][hapmap]
rs4847306	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4847311	0.83[EUR][1000 genomes]
rs4847327	0.82[CHB][hapmap]
rs4847377	0.82[CHB][hapmap]
rs4847378	1.00[JPT][hapmap]
rs4847432	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4970700	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs4970707	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4970709	0.82[CHB][hapmap]
rs4970710	0.82[CHB][hapmap]
rs4970712	0.82[CHB][hapmap]
rs6422512	0.82[CHB][hapmap]
rs6422515	0.82[CHB][hapmap]
rs6603979	0.82[CHB][hapmap]
rs6603981	0.82[CHB][hapmap]
rs6603982	0.82[CHB][hapmap]
rs6603984	0.82[CHB][hapmap]
rs6603985	0.82[CHB][hapmap]
rs6603986	0.86[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs6603987	0.82[CHB][hapmap]
rs6603988	0.82[CHB][hapmap]
rs6603989	0.83[EUR][1000 genomes]
rs6603990	0.82[CHB][hapmap]
rs6603992	0.83[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs6603993	0.82[CHB][hapmap]
rs6603994	0.82[CHB][hapmap]
rs6603995	0.82[CHB][hapmap]
rs6603997	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6603999	0.82[CHB][hapmap]
rs6604003	0.82[CHB][hapmap]
rs6604008	0.93[EUR][1000 genomes]
rs6604010	0.82[CHB][hapmap]
rs6604013	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6604014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6604015	0.82[CHB][hapmap]
rs6604018	0.82[CHB][hapmap]
rs6660136	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6660962	0.81[EUR][1000 genomes]
rs6661600	0.82[CHB][hapmap]
rs6666831	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6671114	0.82[CHB][hapmap]
rs6671421	0.82[CHB][hapmap]
rs6675246	0.82[CHB][hapmap]
rs6675753	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6675757	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6680578	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6682801	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6685705	0.82[CHB][hapmap]
rs6692187	0.82[CHB][hapmap]
rs6695638	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6696173	0.82[CHB][hapmap]
rs6696636	0.82[CHB][hapmap]
rs6697491	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6701130	0.82[CHB][hapmap]
rs6703467	0.82[CHB][hapmap]
rs722356	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs7416169	0.82[CHB][hapmap]
rs7417452	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7418336	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7513775	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7513815	0.82[CHB][hapmap]
rs7514334	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7514716	0.82[CHB][hapmap]
rs7515577	0.82[CHB][hapmap]
rs7516141	0.82[CHB][hapmap]
rs7521752	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7526582	0.82[CHB][hapmap]
rs7529332	0.82[CHB][hapmap]
rs7529630	0.82[CHB][hapmap]
rs7530780	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7535490	0.85[EUR][1000 genomes]
rs7536563	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs7539761	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7540407	0.82[CHB][hapmap]
rs7541588	0.85[EUR][1000 genomes]
rs7541942	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7543327	0.82[CHB][hapmap]
rs7545318	0.82[CHB][hapmap]
rs7546197	0.94[EUR][1000 genomes]
rs7549341	0.83[EUR][1000 genomes]
rs7549844	0.82[CHB][hapmap]
rs7551324	0.85[EUR][1000 genomes]
rs7553367	0.82[CHB][hapmap]
rs7556243	0.82[CHB][hapmap]
rs911523	0.93[EUR][1000 genomes]
rs914966	0.82[CHB][hapmap]
rs927339	0.82[CHB][hapmap]
rs932637	0.82[CHB][hapmap]
rs9439920	0.82[CHB][hapmap]
rs945724	0.82[CHB][hapmap]
rs963043	0.82[CHB][hapmap]
rs963044	0.82[CHB][hapmap]
rs9651256	0.82[CHB][hapmap]
rs976208	0.82[CHB][hapmap]
rs989653	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93098400-93205400	Weak transcription	NHLF	lung
2	chr1:93120000-93171400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:93123400-93176200	Weak transcription	Psoas Muscle	Psoas
4	chr1:93123600-93178800	Weak transcription	Aorta	Aorta
5	chr1:93123600-93213400	Weak transcription	Gastric	stomach
6	chr1:93142400-93171000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:93146600-93175600	Weak transcription	NHEK	skin
8	chr1:93148600-93171000	Weak transcription	Hela-S3	cervix
9	chr1:93155800-93213400	Weak transcription	Lung	lung
10	chr1:93156200-93172800	Weak transcription	HepG2	liver
11	chr1:93156200-93174000	Weak transcription	A549	lung
12	chr1:93156800-93170800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:93157800-93171000	Weak transcription	Stomach Mucosa	stomach
14	chr1:93157800-93175600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:93159000-93174800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr1:93160800-93170600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:93160800-93171000	Weak transcription	NH-A	brain
18	chr1:93160800-93174000	Weak transcription	Brain Angular Gyrus	brain
19	chr1:93160800-93175200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:93160800-93175200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr1:93160800-93175200	Weak transcription	HSMM	muscle
22	chr1:93160800-93177000	Weak transcription	Ovary	ovary
23	chr1:93161000-93170600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:93161000-93170800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr1:93161000-93170800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr1:93161000-93171000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr1:93161000-93171000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:93161000-93171000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr1:93161000-93171000	Weak transcription	Right Ventricle	heart
30	chr1:93161000-93171200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr1:93161000-93175200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr1:93161000-93175600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr1:93161000-93176800	Weak transcription	Colon Smooth Muscle	Colon
34	chr1:93161000-93197400	Weak transcription	Primary B cells from cord blood	blood
35	chr1:93161000-93197800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr1:93161000-93199000	Weak transcription	Left Ventricle	heart
37	chr1:93162200-93175400	Weak transcription	HSMMtube	muscle
38	chr1:93162400-93170800	Weak transcription	Fetal Intestine Small	intestine
39	chr1:93163800-93170800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:93163800-93177400	Weak transcription	Placenta	Placenta
41	chr1:93163800-93190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:93164200-93175400	Weak transcription	Small Intestine	intestine
43	chr1:93167000-93171000	Weak transcription	Fetal Intestine Large	intestine
44	chr1:93167000-93174000	Weak transcription	Fetal Heart	heart
45	chr1:93167200-93170600	Weak transcription	K562	blood
46	chr1:93167200-93171000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:93167200-93175200	Weak transcription	Osteobl	bone
48	chr1:93167400-93175200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:93167400-93175200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:93167600-93177800	Weak transcription	Primary monocytes fromperipheralblood	blood

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