Variant report

Variant	rs10874725
Chromosome Location	chr1:93090850-93090851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1003116	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1034218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1059267	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1059268	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10735781	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10747446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10782912	0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs10782936	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10782937	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10874710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10874711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10874724	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10874726	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10874727	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10874732	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10874733	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10874736	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10874738	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11164601	0.85[EUR][1000 genomes]
rs11164607	0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs11164608	0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs11164785	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11164789	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11164791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11164796	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11164807	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12025792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12073693	0.87[EUR][1000 genomes]
rs12123935	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1325434	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1337107	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1359490	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1535372	1.00[JPT][hapmap]
rs1886684	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1932965	0.82[CHB][hapmap]
rs2065915	0.85[CHB][hapmap]
rs2107518	0.80[EUR][1000 genomes]
rs2107519	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35029291	0.89[EUR][1000 genomes]
rs3903212	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3936944	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3936945	0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs3936946	0.82[CHB][hapmap]
rs4294422	0.85[CHB][hapmap];0.90[EUR][1000 genomes]
rs4294424	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4480368	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4484938	0.89[YRI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4565725	0.83[EUR][1000 genomes]
rs4847267	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4847301	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4847306	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4847432	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4970700	0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs4970702	0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs4970703	0.84[EUR][1000 genomes]
rs4970707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4970714	0.85[CHB][hapmap];0.83[EUR][1000 genomes]
rs6603976	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6603986	0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs6603989	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6603992	0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs6603997	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6604007	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6604008	0.80[EUR][1000 genomes]
rs6604013	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6604014	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6660136	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6660962	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6666831	0.83[EUR][1000 genomes]
rs6675753	0.83[EUR][1000 genomes]
rs6675757	0.80[EUR][1000 genomes]
rs6680578	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6682801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6695638	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6697491	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6703440	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs722356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7417452	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7418336	0.81[EUR][1000 genomes]
rs7513775	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7514156	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7514334	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7520630	0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs7521752	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7530780	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7535490	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7540564	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7541942	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7542867	0.81[EUR][1000 genomes]
rs7546197	0.82[EUR][1000 genomes]
rs911523	0.80[EUR][1000 genomes]
rs912796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs942753	0.85[CHB][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93014800-93100200	Weak transcription	Right Ventricle	heart
2	chr1:93026000-93091800	Weak transcription	Hela-S3	cervix
3	chr1:93052000-93119400	Weak transcription	NHEK	skin
4	chr1:93053600-93166200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:93055000-93100200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:93062000-93118800	Weak transcription	HMEC	breast
7	chr1:93063000-93100600	Weak transcription	Gastric	stomach
8	chr1:93064400-93100800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:93065200-93101000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr1:93065200-93118600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:93065800-93119600	Weak transcription	NH-A	brain
12	chr1:93066800-93103000	Weak transcription	NHDF-Ad	bronchial
13	chr1:93066800-93114600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:93067200-93101000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:93067400-93100800	Weak transcription	Brain Angular Gyrus	brain
16	chr1:93068200-93100600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr1:93068600-93100400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr1:93068600-93112600	Weak transcription	Brain Substantia Nigra	brain
19	chr1:93068800-93103200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:93069400-93104600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:93069600-93119600	Weak transcription	Colon Smooth Muscle	Colon
22	chr1:93070000-93100800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:93070600-93100200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:93070600-93100600	Weak transcription	Colonic Mucosa	Colon
25	chr1:93070600-93101000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr1:93070800-93100800	Weak transcription	Brain Hippocampus Middle	brain
27	chr1:93077200-93100600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:93078400-93096200	Weak transcription	Fetal Heart	heart
29	chr1:93080200-93100800	Weak transcription	Esophagus	oesophagus
30	chr1:93080800-93092600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr1:93081200-93100800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr1:93081200-93100800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:93082200-93101000	Weak transcription	HSMMtube	muscle
34	chr1:93082400-93101200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr1:93082600-93108600	Weak transcription	Psoas Muscle	Psoas
36	chr1:93082800-93100600	Weak transcription	Lung	lung
37	chr1:93082800-93100800	Weak transcription	Aorta	Aorta
38	chr1:93083400-93100400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:93083600-93101000	Weak transcription	Primary B cells from cord blood	blood
40	chr1:93083600-93101000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr1:93083600-93101000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr1:93083600-93106400	Weak transcription	Pancreas	Pancrea
43	chr1:93083800-93101000	Weak transcription	Fetal Kidney	kidney
44	chr1:93084000-93100800	Weak transcription	Left Ventricle	heart
45	chr1:93084000-93101000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr1:93084000-93101000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr1:93084200-93091200	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr1:93084200-93100200	Weak transcription	Fetal Lung	lung
49	chr1:93084200-93100600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr1:93084200-93100600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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