Variant report

Variant	rs912796
Chromosome Location	chr1:92961410-92961411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:92956534..92958964-chr1:92961185..92963845,2	K562	blood:
2	chr1:92959158..92961612-chr1:92965484..92967176,2	K562	blood:
3	chr1:92950634..92953035-chr1:92959053..92961918,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162676	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1034218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1059267	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1059268	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735781	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10747446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10782912	0.92[CEU][hapmap];0.85[CHB][hapmap];0.94[EUR][1000 genomes]
rs10782936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10782937	0.85[EUR][1000 genomes]
rs10874710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10874711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10874724	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10874725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10874726	0.86[EUR][1000 genomes]
rs10874727	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs11164601	0.95[EUR][1000 genomes]
rs11164607	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[EUR][1000 genomes]
rs11164608	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[EUR][1000 genomes]
rs11164785	0.86[EUR][1000 genomes]
rs11164789	0.81[EUR][1000 genomes]
rs11164791	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11164796	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12025792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[EUR][1000 genomes]
rs1325434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359490	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs1886684	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932965	0.82[CHB][hapmap]
rs3903212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3936944	0.86[EUR][1000 genomes]
rs3936945	0.91[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes]
rs3936946	0.82[CHB][hapmap]
rs4000736	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4294422	0.95[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes]
rs4294424	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4484938	0.84[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565725	0.93[EUR][1000 genomes]
rs4847267	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4847432	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4970700	0.95[CEU][hapmap];0.85[CHB][hapmap];0.93[EUR][1000 genomes]
rs4970702	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[EUR][1000 genomes]
rs4970703	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4970707	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4970714	0.83[CEU][hapmap];0.85[CHB][hapmap];0.93[EUR][1000 genomes]
rs6603976	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603986	0.95[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes]
rs6603989	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6603992	0.92[CEU][hapmap];0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs6603997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6660962	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6682801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6695638	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6697491	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6703440	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7417452	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7513775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7514156	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514334	0.83[EUR][1000 genomes]
rs7520630	0.92[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7521752	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7530780	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7535490	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7540564	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541942	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs942753	0.95[CEU][hapmap];0.85[CHB][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92952800-92991400	Weak transcription	Pancreas	Pancrea
2	chr1:92959400-92961800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:92959400-92962200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr1:92960000-92961600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:92960000-92961800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:92960000-92962600	Enhancers	Fetal Thymus	thymus
7	chr1:92960000-92963200	Enhancers	Thymus	Thymus
8	chr1:92960000-92963200	Enhancers	Dnd41	blood
9	chr1:92960200-92961600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:92960400-92961600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr1:92960400-92962200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:92960400-92962400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:92961000-92961600	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr1:92961000-92962000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr1:92961400-92961600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

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