Variant report

Variant	rs4000736
Chromosome Location	chr1:92967416-92967417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92966213..92967756-chr1:92973026..92974536,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1059267	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1059268	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10782912	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10874710	0.82[EUR][1000 genomes]
rs10874711	0.82[EUR][1000 genomes]
rs11164601	0.85[EUR][1000 genomes]
rs11164607	0.85[EUR][1000 genomes]
rs11164608	0.85[EUR][1000 genomes]
rs1325434	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1359490	0.86[EUR][1000 genomes]
rs1886684	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3903212	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4484938	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4565725	0.85[EUR][1000 genomes]
rs4970700	0.83[EUR][1000 genomes]
rs4970702	0.85[EUR][1000 genomes]
rs4970703	0.86[EUR][1000 genomes]
rs4970707	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4970714	0.85[EUR][1000 genomes]
rs6603976	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603989	0.81[EUR][1000 genomes]
rs6660962	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6695638	0.81[EUR][1000 genomes]
rs6703440	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs722356	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7513775	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7514156	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7520630	0.86[EUR][1000 genomes]
rs7521752	0.82[EUR][1000 genomes]
rs7540564	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7541942	0.80[EUR][1000 genomes]
rs912796	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs942753	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92952800-92991400	Weak transcription	Pancreas	Pancrea
2	chr1:92961600-92969800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:92965200-92968600	Weak transcription	Fetal Thymus	thymus
4	chr1:92967200-92967600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:92967400-92969800	Enhancers	Dnd41	blood

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