The 2.0 version of rSNPBase

Variant report

Variant rs11164601
Chromosome Location chr1:92945507-92945508
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92925600-92946000 Weak transcription Right Atrium heart
2 chr1:92939400-92945800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
3 chr1:92940000-92947400 Genic enhancers Primary T cells fromperipheralblood blood
4 chr1:92941800-92946000 Weak transcription Gastric stomach
5 chr1:92942000-92945600 Weak transcription Pancreas Pancrea
6 chr1:92942600-92947400 Weak transcription Primary T regulatory cells fromperipheralblood blood
7 chr1:92942600-92947600 Weak transcription Primary monocytes fromperipheralblood blood
8 chr1:92942800-92947200 Weak transcription Primary B cells from cord blood blood
9 chr1:92942800-92947600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr1:92943200-92947000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr1:92943200-92949200 Transcr. at gene 5' and 3' Dnd41 blood
12 chr1:92943400-92945600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr1:92943400-92949200 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
14 chr1:92943600-92946000 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
15 chr1:92943800-92946600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
16 chr1:92943800-92946800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
17 chr1:92944000-92945800 Enhancers Primary neutrophils fromperipheralblood blood
18 chr1:92944000-92946000 Genic enhancers Primary T helper cells PMA-I stimulated --
19 chr1:92944000-92946800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:92944200-92946800 Strong transcription Primary hematopoietic stem cells blood
21 chr1:92944400-92946000 Strong transcription Primary T cells from cord blood blood
22 chr1:92944400-92946800 ZNF genes & repeats Spleen Spleen
23 chr1:92944600-92945600 Genic enhancers Thymus Thymus
24 chr1:92944600-92945800 Genic enhancers Primary T helper naive cells from peripheral blood blood
25 chr1:92944800-92945600 Genic enhancers Primary T killer memory cells from peripheral blood blood
26 chr1:92944800-92946800 Strong transcription Primary T helper naive cells fromperipheralblood blood
27 chr1:92945200-92946800 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
28 chr1:92945200-92947400 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr1:92945200-92947600 Weak transcription GM12878-XiMat blood
30 chr1:92945200-92949000 Weak transcription HepG2 liver
31 chr1:92945400-92945600 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
32 chr1:92945400-92945600 Bivalent Enhancer Skeletal Muscle Male skeletal muscle
33 chr1:92945400-92945800 Enhancers Primary T helper cells fromperipheralblood blood
34 chr1:92945400-92945800 Transcr. at gene 5' and 3' Fetal Thymus thymus

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Last update: Aug 31, 2015