Variant report

Variant	rs6603979
Chromosome Location	chr1:92979354-92979355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92977725..92979355-chr1:92980937..92983105,2	K562	blood:

Extended variants
information (count: 229 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:227)

rs_ID	r²[population]
rs1003116	0.82[CHB][hapmap]
rs10218567	1.00[YRI][hapmap]
rs10218670	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1034219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10465754	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10465756	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10735778	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10735779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10735781	0.82[CHB][hapmap]
rs10735782	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10735783	0.89[ASN][1000 genomes]
rs10735784	0.89[ASN][1000 genomes]
rs10747444	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10747445	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs10747448	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs10747449	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10747450	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10782838	0.94[CEU][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs10782912	0.82[CHB][hapmap]
rs10782922	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10782940	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10874656	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874712	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10874715	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs10874716	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs10874721	0.89[ASN][1000 genomes]
rs10874728	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10874729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10874731	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11164605	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164607	0.82[CHB][hapmap]
rs11164608	0.82[CHB][hapmap]
rs11164654	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11164770	0.88[EUR][1000 genomes]
rs11164773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11164778	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs11164780	0.85[ASN][1000 genomes]
rs11164791	0.82[CHB][hapmap]
rs11164796	0.82[CHB][hapmap]
rs11164799	0.89[ASN][1000 genomes]
rs1182640	0.89[ASN][1000 genomes]
rs12046739	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs12753280	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1337108	0.89[ASN][1000 genomes]
rs1337109	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs1359490	0.82[CHB][hapmap]
rs1408916	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1415294	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1415295	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1537498	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs1538029	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1556562	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1556563	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1556564	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1556565	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap]
rs1570836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17519833	0.94[CEU][hapmap]
rs17579779	0.87[EUR][1000 genomes]
rs1886682	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1906279	0.94[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1932965	1.00[CHB][hapmap]
rs1932966	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1932967	0.89[ASN][1000 genomes]
rs2008797	0.89[ASN][1000 genomes]
rs2025101	0.89[ASN][1000 genomes]
rs2025607	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2027059	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs2027060	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs2027061	0.81[EUR][1000 genomes]
rs2031494	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039451	0.89[ASN][1000 genomes]
rs2039452	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs2039453	0.89[ASN][1000 genomes]
rs2046621	0.94[CEU][hapmap]
rs2050597	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs2065916	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2077529	0.89[ASN][1000 genomes]
rs2095265	0.89[ASN][1000 genomes]
rs2095266	0.89[ASN][1000 genomes]
rs2095267	0.89[ASN][1000 genomes]
rs2095268	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2107520	0.89[ASN][1000 genomes]
rs2107521	0.89[ASN][1000 genomes]
rs2151577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2158446	0.89[ASN][1000 genomes]
rs2180977	0.89[ASN][1000 genomes]
rs2184193	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2391159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391164	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs2391196	0.89[ASN][1000 genomes]
rs2391199	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2391200	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2893217	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs3790446	0.89[ASN][1000 genomes]
rs3898498	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs3898499	0.89[ASN][1000 genomes]
rs3928821	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs3936945	0.82[CHB][hapmap]
rs3936946	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4247165	0.94[CEU][hapmap]
rs4264007	0.89[ASN][1000 genomes]
rs4294422	0.82[CHB][hapmap]
rs4294424	0.82[CHB][hapmap]
rs4375281	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4525050	0.89[ASN][1000 genomes]
rs4568842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4638137	0.89[ASN][1000 genomes]
rs4847181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4847232	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4847234	0.85[ASN][1000 genomes]
rs4847247	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4847266	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4847267	0.82[CHB][hapmap]
rs4847280	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4847285	0.89[ASN][1000 genomes]
rs4847304	0.89[ASN][1000 genomes]
rs4847305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4847327	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4847377	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4847400	0.89[ASN][1000 genomes]
rs4847432	0.82[CHB][hapmap]
rs4970696	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970698	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970700	1.00[ASW][hapmap];0.82[CHB][hapmap];0.81[AFR][1000 genomes]
rs4970701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4970702	0.82[CHB][hapmap]
rs4970705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970708	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970712	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4970714	0.82[CHB][hapmap]
rs59679370	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6422512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6422513	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6422514	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6422515	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs6603975	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6603980	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603981	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603986	0.82[CHB][hapmap]
rs6603987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603992	0.82[CHB][hapmap]
rs6603993	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs6603994	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs6603995	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6603999	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs6604003	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6604007	0.82[CHB][hapmap]
rs6604010	0.89[ASN][1000 genomes]
rs6604012	0.85[ASN][1000 genomes]
rs6604091	0.94[CEU][hapmap]
rs6656432	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6660296	0.89[ASN][1000 genomes]
rs6661134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6661600	0.89[ASN][1000 genomes]
rs6665579	0.89[ASN][1000 genomes]
rs6668584	0.89[ASN][1000 genomes]
rs6668685	0.94[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6669914	0.89[ASN][1000 genomes]
rs6671114	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs6671421	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6675246	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs6676141	0.81[EUR][1000 genomes]
rs6676846	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6678864	0.89[ASN][1000 genomes]
rs6680578	0.82[CHB][hapmap]
rs6686702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690764	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691038	0.89[ASN][1000 genomes]
rs6692060	0.94[CEU][hapmap]
rs6692187	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6696173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6701130	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs6704249	0.85[ASN][1000 genomes]
rs723909	1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs7416169	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7512301	0.94[CEU][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs7514716	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs7515577	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7515866	0.89[ASN][1000 genomes]
rs7516141	0.89[ASN][1000 genomes]
rs7518357	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7520630	0.82[CHB][hapmap]
rs7521345	0.89[ASN][1000 genomes]
rs7526582	0.89[ASN][1000 genomes]
rs7529332	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7529630	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7530780	0.82[CHB][hapmap]
rs7536295	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7540407	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7542747	0.94[CEU][hapmap]
rs7545318	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs7549844	0.89[ASN][1000 genomes]
rs7552212	0.80[EUR][1000 genomes]
rs7553367	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs7556243	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs757469	0.89[ASN][1000 genomes]
rs912795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs914966	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs927339	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs932637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs942753	0.82[CHB][hapmap]
rs9439920	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs945724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs962221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963043	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs963044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9633481	0.89[ASN][1000 genomes]
rs9651256	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs9661812	0.81[ASN][1000 genomes]
rs9699810	0.89[ASN][1000 genomes]
rs976208	0.89[ASN][1000 genomes]
rs976209	0.89[ASN][1000 genomes]
rs980940	0.89[ASN][1000 genomes]
rs989653	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1004381	chr1:92968173-93064823	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6603979	FAM69A	cis	cerebellum	SCAN
rs6603979	RPL10A	trans	cerebellum	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92952800-92991400	Weak transcription	Pancreas	Pancrea
2	chr1:92967800-92986000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:92968200-93042800	Weak transcription	HSMM	muscle
4	chr1:92968400-92997600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:92969400-92979800	Weak transcription	HSMMtube	muscle
6	chr1:92969600-92984200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:92969800-92992000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:92969800-92996800	Weak transcription	NH-A	brain
9	chr1:92970000-92992200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:92970600-92981800	Weak transcription	Primary B cells from cord blood	blood
11	chr1:92971400-92998600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:92972600-93013400	Weak transcription	Ovary	ovary
13	chr1:92973000-92983800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:92973400-92987400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr1:92973800-92997600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr1:92973800-93002200	Weak transcription	Fetal Intestine Large	intestine
17	chr1:92975200-92979600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr1:92975200-92980600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr1:92975600-92980400	Weak transcription	Dnd41	blood
20	chr1:92976400-93042400	Weak transcription	Fetal Stomach	stomach
21	chr1:92976600-92981200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr1:92977400-92979600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:92977400-92993200	Weak transcription	Brain Hippocampus Middle	brain
24	chr1:92977600-92995000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr1:92977600-92995800	Weak transcription	Right Ventricle	heart
26	chr1:92977600-93010600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:92977600-93013200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:92977800-92986800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr1:92977800-92987400	Weak transcription	Fetal Muscle Leg	muscle
30	chr1:92977800-92995000	Weak transcription	Lung	lung
31	chr1:92978000-92982800	Weak transcription	Adipose Nuclei	Adipose
32	chr1:92978000-92995600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:92978200-92980600	Weak transcription	Aorta	Aorta
34	chr1:92978600-92982200	Strong transcription	Liver	Liver
35	chr1:92978800-92979600	Strong transcription	Placenta	Placenta
36	chr1:92978800-92991600	Weak transcription	Fetal Intestine Small	intestine
37	chr1:92979200-92979600	Strong transcription	Left Ventricle	heart

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