Variant report

Variant	rs10874656
Chromosome Location	chr1:92947024-92947025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:92946105..92948838-chr1:92954798..92958203,3	K562	blood:
2	chr1:92940468..92943663-chr1:92944026..92947261,3	K562	blood:
3	chr1:92946814..92948469-chr1:92951541..92953098,2	K562	blood:

Variant related genes	Relation type
ENSG00000162676	Chromatin interaction

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs1034219	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10465754	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10465756	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10735778	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10735779	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10747411	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10747444	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10747445	0.89[ASN][1000 genomes]
rs10782922	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782935	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10874712	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10874715	0.89[ASN][1000 genomes]
rs10874716	0.89[ASN][1000 genomes]
rs10874721	0.89[ASN][1000 genomes]
rs11164605	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164654	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11164770	0.84[EUR][1000 genomes]
rs11164773	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11164778	0.89[ASN][1000 genomes]
rs11164780	0.85[ASN][1000 genomes]
rs11164799	0.89[ASN][1000 genomes]
rs11166568	0.82[AMR][1000 genomes]
rs11166575	0.82[AMR][1000 genomes]
rs12046739	0.89[ASN][1000 genomes]
rs12753280	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1337109	0.89[ASN][1000 genomes]
rs1408916	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1487537	0.82[AMR][1000 genomes]
rs1537498	0.89[ASN][1000 genomes]
rs1556562	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1556563	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1570836	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570837	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17519833	0.81[EUR][1000 genomes]
rs17579779	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1886682	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886683	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1906279	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2025607	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2027059	0.89[ASN][1000 genomes]
rs2027060	0.89[ASN][1000 genomes]
rs2031494	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039451	0.89[ASN][1000 genomes]
rs2039452	0.89[ASN][1000 genomes]
rs2039453	0.89[ASN][1000 genomes]
rs2046621	0.82[AMR][1000 genomes]
rs2050597	0.89[ASN][1000 genomes]
rs2077529	0.89[ASN][1000 genomes]
rs2095265	0.89[ASN][1000 genomes]
rs2095266	0.89[ASN][1000 genomes]
rs2095267	0.89[ASN][1000 genomes]
rs2095268	0.89[ASN][1000 genomes]
rs2151577	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2184193	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2391159	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391160	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391164	0.89[ASN][1000 genomes]
rs2893217	0.89[ASN][1000 genomes]
rs3898498	0.89[ASN][1000 genomes]
rs3898499	0.89[ASN][1000 genomes]
rs3928821	0.89[ASN][1000 genomes]
rs4247165	0.81[EUR][1000 genomes]
rs4375281	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568842	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4847181	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4847232	0.89[ASN][1000 genomes]
rs4847234	0.85[ASN][1000 genomes]
rs4847280	0.89[ASN][1000 genomes]
rs4847285	0.89[ASN][1000 genomes]
rs4847305	0.89[ASN][1000 genomes]
rs4847327	0.89[ASN][1000 genomes]
rs4847377	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4847400	0.89[ASN][1000 genomes]
rs4970696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970701	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4970705	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970706	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970708	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970709	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970710	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970712	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59679370	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6422512	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6422513	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6422514	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6422515	0.89[ASN][1000 genomes]
rs6603963	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6603967	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6603975	0.98[EUR][1000 genomes]
rs6603979	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603980	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603981	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603982	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603984	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603985	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603987	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603988	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603990	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603993	0.89[ASN][1000 genomes]
rs6603994	0.89[ASN][1000 genomes]
rs6603999	0.89[ASN][1000 genomes]
rs6604010	0.89[ASN][1000 genomes]
rs6604091	0.82[AMR][1000 genomes]
rs6656432	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6661134	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6665579	0.89[ASN][1000 genomes]
rs6668584	0.89[ASN][1000 genomes]
rs6668685	0.82[AMR][1000 genomes]
rs6669914	0.89[ASN][1000 genomes]
rs6671114	0.89[ASN][1000 genomes]
rs6675246	0.89[ASN][1000 genomes]
rs6676141	0.85[EUR][1000 genomes]
rs6676846	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6678864	0.89[ASN][1000 genomes]
rs6686702	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690764	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691038	0.89[ASN][1000 genomes]
rs6692060	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6692187	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6696173	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6701130	0.89[ASN][1000 genomes]
rs6704249	0.85[ASN][1000 genomes]
rs723909	0.89[ASN][1000 genomes]
rs7512301	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7514716	0.89[ASN][1000 genomes]
rs7515577	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7515866	0.89[ASN][1000 genomes]
rs7518357	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7521345	0.89[ASN][1000 genomes]
rs7536295	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7542747	0.82[AMR][1000 genomes]
rs7545318	0.89[ASN][1000 genomes]
rs7545445	0.82[AMR][1000 genomes]
rs7552212	0.84[EUR][1000 genomes]
rs7553367	0.89[ASN][1000 genomes]
rs7556243	0.89[ASN][1000 genomes]
rs912795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs914966	0.89[ASN][1000 genomes]
rs9439920	0.89[ASN][1000 genomes]
rs962221	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962222	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963043	0.89[ASN][1000 genomes]
rs963044	0.89[ASN][1000 genomes]
rs9633481	0.89[ASN][1000 genomes]
rs9651256	0.89[ASN][1000 genomes]
rs9661812	0.81[ASN][1000 genomes]
rs9699810	0.89[ASN][1000 genomes]
rs989653	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92940000-92947400	Genic enhancers	Primary T cells fromperipheralblood	blood
2	chr1:92942600-92947400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr1:92942600-92947600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr1:92942800-92947200	Weak transcription	Primary B cells from cord blood	blood
5	chr1:92942800-92947600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:92943200-92949200	Transcr. at gene 5' and 3'	Dnd41	blood
7	chr1:92943400-92949200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
8	chr1:92945200-92947400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:92945200-92947600	Weak transcription	GM12878-XiMat	blood
10	chr1:92945200-92949000	Weak transcription	HepG2	liver
11	chr1:92945600-92947200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:92945600-92947200	Bivalent Enhancer	Esophagus	oesophagus
13	chr1:92945600-92947200	Bivalent Enhancer	Lung	lung
14	chr1:92945600-92947400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
15	chr1:92945600-92947600	Transcr. at gene 5' and 3'	Thymus	Thymus
16	chr1:92945600-92948000	Bivalent Enhancer	Fetal Lung	lung
17	chr1:92945600-92952200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:92945600-92952600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr1:92945600-92952800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
20	chr1:92945800-92947200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:92945800-92947200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr1:92945800-92947600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr1:92945800-92947600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr1:92945800-92947800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr1:92945800-92947800	Bivalent Enhancer	Fetal Stomach	stomach
26	chr1:92945800-92948000	Bivalent Enhancer	Fetal Brain Male	brain
27	chr1:92945800-92949200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr1:92945800-92950000	Bivalent Enhancer	Fetal Heart	heart
29	chr1:92945800-92951800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:92946000-92947200	Flanking Bivalent TSS/Enh	Right Ventricle	heart
31	chr1:92946000-92947400	Bivalent Enhancer	Fetal Muscle Leg	muscle
32	chr1:92946000-92947600	Weak transcription	Primary T cells from cord blood	blood
33	chr1:92946000-92948000	Enhancers	Gastric	stomach
34	chr1:92946000-92951000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
35	chr1:92946000-92952000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:92946200-92947800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
37	chr1:92946400-92947200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr1:92946400-92947200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:92946400-92947400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:92946400-92947400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
41	chr1:92946400-92947600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
42	chr1:92946400-92947600	Bivalent Enhancer	Fetal Intestine Large	intestine
43	chr1:92946400-92947600	Bivalent Enhancer	Placenta	Placenta
44	chr1:92946600-92947200	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
45	chr1:92946600-92947200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
46	chr1:92946600-92947400	Bivalent Enhancer	Brain Anterior Caudate	brain
47	chr1:92946600-92947400	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
48	chr1:92946600-92947400	Flanking Bivalent TSS/Enh	NHEK	skin
49	chr1:92946600-92947600	Bivalent Enhancer	Liver	Liver
50	chr1:92946600-92947600	Bivalent Enhancer	Brain Substantia Nigra	brain

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