Variant report

Variant	rs11164770
Chromosome Location	chr2:56549280-56549281
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1034219	0.86[EUR][1000 genomes]
rs10465754	0.85[EUR][1000 genomes]
rs10465756	0.86[EUR][1000 genomes]
rs10735778	0.85[EUR][1000 genomes]
rs10735779	0.86[EUR][1000 genomes]
rs10747444	0.86[EUR][1000 genomes]
rs10782922	0.85[EUR][1000 genomes]
rs10782935	0.86[EUR][1000 genomes]
rs10874656	0.84[EUR][1000 genomes]
rs10874712	0.86[EUR][1000 genomes]
rs11164605	0.84[EUR][1000 genomes]
rs11164654	0.81[EUR][1000 genomes]
rs11164773	0.83[EUR][1000 genomes]
rs12753280	0.84[EUR][1000 genomes]
rs1408916	0.88[EUR][1000 genomes]
rs1556562	0.86[EUR][1000 genomes]
rs1556563	0.86[EUR][1000 genomes]
rs1570836	0.85[EUR][1000 genomes]
rs1570837	0.86[EUR][1000 genomes]
rs1886682	0.85[EUR][1000 genomes]
rs1886683	0.83[EUR][1000 genomes]
rs2027061	0.87[EUR][1000 genomes]
rs2031494	0.84[EUR][1000 genomes]
rs2151577	0.88[EUR][1000 genomes]
rs2184193	0.84[EUR][1000 genomes]
rs2391159	0.85[EUR][1000 genomes]
rs2391160	0.88[EUR][1000 genomes]
rs4375281	0.88[EUR][1000 genomes]
rs4568842	0.88[EUR][1000 genomes]
rs4847181	0.86[EUR][1000 genomes]
rs4847377	0.86[EUR][1000 genomes]
rs4970696	0.85[EUR][1000 genomes]
rs4970698	0.85[EUR][1000 genomes]
rs4970701	0.88[EUR][1000 genomes]
rs4970705	0.85[EUR][1000 genomes]
rs4970706	0.85[EUR][1000 genomes]
rs4970708	0.88[EUR][1000 genomes]
rs4970709	0.88[EUR][1000 genomes]
rs4970710	0.88[EUR][1000 genomes]
rs4970712	0.88[EUR][1000 genomes]
rs6422512	0.86[EUR][1000 genomes]
rs6422513	0.86[EUR][1000 genomes]
rs6603975	0.82[EUR][1000 genomes]
rs6603979	0.88[EUR][1000 genomes]
rs6603980	0.86[EUR][1000 genomes]
rs6603981	0.88[EUR][1000 genomes]
rs6603982	0.88[EUR][1000 genomes]
rs6603984	0.86[EUR][1000 genomes]
rs6603985	0.86[EUR][1000 genomes]
rs6603987	0.86[EUR][1000 genomes]
rs6603988	0.86[EUR][1000 genomes]
rs6603990	0.86[EUR][1000 genomes]
rs6656432	0.86[EUR][1000 genomes]
rs6661134	0.85[EUR][1000 genomes]
rs6676846	0.83[EUR][1000 genomes]
rs6686702	0.88[EUR][1000 genomes]
rs6690764	0.85[EUR][1000 genomes]
rs6692187	0.86[EUR][1000 genomes]
rs6696173	0.88[EUR][1000 genomes]
rs7515577	0.86[EUR][1000 genomes]
rs7536295	0.84[EUR][1000 genomes]
rs912795	0.83[EUR][1000 genomes]
rs962221	0.85[EUR][1000 genomes]
rs962222	0.85[EUR][1000 genomes]
rs989653	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527600-56561000	Weak transcription	HSMM	muscle
2	chr2:56546200-56552800	Weak transcription	Left Ventricle	heart

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