Variant report

Variant	rs912795
Chromosome Location	chr1:92960472-92960473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:92959158..92961612-chr1:92965484..92967176,2	K562	blood:
2	chr1:92952134..92955339-chr1:92958128..92960891,5	K562	blood:
3	chr1:92950634..92953035-chr1:92959053..92961918,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162676	Chromatin interaction

Extended variants
information (count: 206 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:205)

rs_ID	r²[population]
rs1034219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10465754	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10465756	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10735778	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10735779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10735781	0.82[CHB][hapmap]
rs10735782	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10735783	0.81[ASN][1000 genomes]
rs10747411	0.82[AMR][1000 genomes]
rs10747444	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10747445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10747448	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10747449	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10747450	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10782838	0.94[CEU][hapmap]
rs10782912	0.82[CHB][hapmap]
rs10782922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10782935	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10782940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10874656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10874712	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10874715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10874716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10874721	0.81[ASN][1000 genomes]
rs10874728	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10874729	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10874731	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11164605	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11164607	0.82[CHB][hapmap]
rs11164608	0.82[CHB][hapmap]
rs11164654	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11164770	0.83[EUR][1000 genomes]
rs11164773	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11164778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11164791	0.82[CHB][hapmap]
rs11164796	0.82[CHB][hapmap]
rs11164799	0.81[ASN][1000 genomes]
rs11166568	0.82[AMR][1000 genomes]
rs11166575	0.82[AMR][1000 genomes]
rs12046739	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12753280	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1337109	0.81[ASN][1000 genomes]
rs1359490	0.82[CHB][hapmap]
rs1408916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1415294	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1415295	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1487537	0.82[AMR][1000 genomes]
rs1537498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1538029	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1556562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556563	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556564	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1556565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1570836	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1570837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17519833	0.94[CEU][hapmap]
rs17579779	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1886682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1886683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1906279	0.94[CEU][hapmap];0.82[AMR][1000 genomes]
rs1932965	1.00[CHB][hapmap]
rs1932966	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1932967	0.81[ASN][1000 genomes]
rs2008797	0.81[ASN][1000 genomes]
rs2025607	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2027059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2027060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2031494	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2039451	0.81[ASN][1000 genomes]
rs2039452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2039453	0.81[ASN][1000 genomes]
rs2046621	0.94[CEU][hapmap];0.82[AMR][1000 genomes]
rs2050597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2065916	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2077529	0.81[ASN][1000 genomes]
rs2095265	0.81[ASN][1000 genomes]
rs2095266	0.81[ASN][1000 genomes]
rs2095267	0.81[ASN][1000 genomes]
rs2095268	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs2107520	0.81[ASN][1000 genomes]
rs2151577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2184193	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2391140	0.87[CEU][hapmap]
rs2391159	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2391160	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2391164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2391196	0.81[ASN][1000 genomes]
rs2391200	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2893217	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3898498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3898499	0.81[ASN][1000 genomes]
rs3928821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3936945	0.82[CHB][hapmap]
rs3936946	1.00[CHB][hapmap]
rs4247165	0.94[CEU][hapmap]
rs4294422	0.82[CHB][hapmap]
rs4294424	0.82[CHB][hapmap]
rs4375281	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4568842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4847181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4847232	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4847247	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4847266	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4847267	0.82[CHB][hapmap]
rs4847280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4847285	0.81[ASN][1000 genomes]
rs4847305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4847327	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4847377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4847400	0.81[ASN][1000 genomes]
rs4847432	0.82[CHB][hapmap]
rs4970696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4970698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4970700	0.82[CHB][hapmap]
rs4970701	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4970702	0.82[CHB][hapmap]
rs4970705	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4970706	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4970708	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4970709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4970710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4970712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4970714	0.82[CHB][hapmap]
rs59679370	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6422512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6422513	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6422514	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6422515	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6603963	0.82[AMR][1000 genomes]
rs6603967	0.82[AMR][1000 genomes]
rs6603975	0.97[EUR][1000 genomes]
rs6603979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6603980	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6603981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6603982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6603984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6603985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6603986	0.82[CHB][hapmap]
rs6603987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6603988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6603990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6603992	0.82[CHB][hapmap]
rs6603993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6603994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6603995	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6603999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6604003	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6604010	0.81[ASN][1000 genomes]
rs6604089	1.00[CEU][hapmap]
rs6604091	0.94[CEU][hapmap];0.82[AMR][1000 genomes]
rs6656432	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6661134	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6661600	0.81[ASN][1000 genomes]
rs6665579	0.81[ASN][1000 genomes]
rs6668584	0.81[ASN][1000 genomes]
rs6668685	0.94[CEU][hapmap];0.82[AMR][1000 genomes]
rs6669914	0.81[ASN][1000 genomes]
rs6671114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6675246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6676141	0.84[EUR][1000 genomes]
rs6676846	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6678864	0.81[ASN][1000 genomes]
rs6686702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6690764	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6691038	0.81[ASN][1000 genomes]
rs6692060	0.94[CEU][hapmap];0.82[AMR][1000 genomes]
rs6692187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6696173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6701130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs723909	0.81[ASN][1000 genomes]
rs7416169	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7512301	0.94[CEU][hapmap];0.82[AMR][1000 genomes]
rs7514716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7515577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7515866	0.81[ASN][1000 genomes]
rs7516141	0.81[ASN][1000 genomes]
rs7516537	0.82[ASN][1000 genomes]
rs7518357	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7520630	0.82[CHB][hapmap]
rs7521345	0.81[ASN][1000 genomes]
rs7529332	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7529630	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7530780	0.82[CHB][hapmap]
rs7536295	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7540407	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7542747	0.94[CEU][hapmap];0.82[AMR][1000 genomes]
rs7545318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7545445	0.82[AMR][1000 genomes]
rs7549844	0.81[ASN][1000 genomes]
rs7552212	0.83[EUR][1000 genomes]
rs7553367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7556243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs757469	0.81[ASN][1000 genomes]
rs914966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs942753	0.82[CHB][hapmap]
rs9439920	0.81[ASN][1000 genomes]
rs945724	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs962221	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs962222	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs963043	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs963044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs9633481	0.81[ASN][1000 genomes]
rs9651256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9699810	0.81[ASN][1000 genomes]
rs989653	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92952800-92991400	Weak transcription	Pancreas	Pancrea
2	chr1:92958200-92961400	Enhancers	HepG2	liver
3	chr1:92959400-92961800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:92959400-92962200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr1:92960000-92961000	Enhancers	Primary T cells from cord blood	blood
6	chr1:92960000-92961000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr1:92960000-92961000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr1:92960000-92961400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr1:92960000-92961600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr1:92960000-92961800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:92960000-92962600	Enhancers	Fetal Thymus	thymus
12	chr1:92960000-92963200	Enhancers	Thymus	Thymus
13	chr1:92960000-92963200	Enhancers	Dnd41	blood
14	chr1:92960200-92961600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr1:92960400-92960800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr1:92960400-92961600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr1:92960400-92962200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:92960400-92962400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links