The 2.0 version of rSNPBase

Variant report

Variant rs3898499
Chromosome Location chr1:93051789-93051790
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92983600-93066200 Weak transcription Adipose Nuclei Adipose
2 chr1:92994600-93066000 Weak transcription Placenta Placenta
3 chr1:93004400-93070000 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr1:93014800-93053000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr1:93014800-93100200 Weak transcription Right Ventricle heart
6 chr1:93017000-93066000 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr1:93018600-93054600 Weak transcription Lung lung
8 chr1:93024200-93056000 Weak transcription Fetal Heart heart
9 chr1:93026000-93091800 Weak transcription Hela-S3 cervix
10 chr1:93027400-93066000 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr1:93030000-93054600 Weak transcription Aorta Aorta
12 chr1:93030000-93082200 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:93032000-93054400 Weak transcription Fetal Lung lung
14 chr1:93034000-93054600 Weak transcription Fetal Intestine Small intestine
15 chr1:93034400-93081000 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr1:93041400-93054400 Weak transcription Fetal Muscle Leg muscle
17 chr1:93041400-93054600 Weak transcription Pancreas Pancrea
18 chr1:93041600-93059000 Weak transcription Brain Angular Gyrus brain
19 chr1:93043200-93054400 Weak transcription Left Ventricle heart
20 chr1:93043200-93070000 Weak transcription Primary B cells from peripheral blood blood
21 chr1:93043400-93054600 Weak transcription Fetal Stomach stomach
22 chr1:93044200-93053800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr1:93044800-93054600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr1:93045600-93052000 Enhancers Primary neutrophils fromperipheralblood blood
25 chr1:93045800-93070000 Weak transcription Duodenum Mucosa Duodenum
26 chr1:93046400-93054600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr1:93046800-93070200 Weak transcription Brain Anterior Caudate brain
28 chr1:93047400-93053400 Enhancers Primary T killer memory cells from peripheral blood blood
29 chr1:93047400-93054600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr1:93047600-93054600 Weak transcription Ovary ovary
31 chr1:93048600-93053400 Enhancers Primary T helper 17 cells PMA-I stimulated --
32 chr1:93049200-93052000 Enhancers NHEK skin
33 chr1:93049400-93051800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:93050000-93051800 Enhancers Primary T killer naive cells fromperipheralblood blood
35 chr1:93050000-93051800 Enhancers Muscle Satellite Cultured Cells --
36 chr1:93050000-93052000 Strong transcription Liver Liver
37 chr1:93050000-93052000 Enhancers HMEC breast
38 chr1:93050000-93053600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
39 chr1:93050000-93053800 Weak transcription Primary B cells from cord blood blood
40 chr1:93050200-93052000 Enhancers Primary T helper naive cells fromperipheralblood blood
41 chr1:93050200-93052000 Enhancers GM12878-XiMat blood
42 chr1:93050200-93052400 Enhancers Primary T cells from cord blood blood
43 chr1:93050200-93052600 Enhancers Primary T helper naive cells from peripheral blood blood
44 chr1:93050200-93052600 Enhancers Primary T helper cells fromperipheralblood blood
45 chr1:93050200-93053400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
46 chr1:93050200-93054600 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr1:93050200-93081200 Weak transcription HSMMtube muscle
48 chr1:93050400-93052000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:93050400-93052000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr1:93050600-93054000 Enhancers Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015