Variant report

Variant	rs4000727
Chromosome Location	chr18:25432326-25432327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 206 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs1017008	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10218567	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10218571	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10218670	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10735782	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10735783	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10735784	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10747445	0.95[EUR][1000 genomes]
rs10747447	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10747448	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10747449	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10747450	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10747451	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10747452	0.83[EUR][1000 genomes]
rs10782938	0.95[EUR][1000 genomes]
rs10782940	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10782942	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10874715	0.95[EUR][1000 genomes]
rs10874716	0.95[EUR][1000 genomes]
rs10874721	0.95[EUR][1000 genomes]
rs10874728	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10874729	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10874730	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10874731	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11164778	0.95[EUR][1000 genomes]
rs11164790	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11164799	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11164804	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11164805	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11164806	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11164808	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11164809	0.94[EUR][1000 genomes]
rs11164812	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11164813	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1182632	0.87[EUR][1000 genomes]
rs1182633	0.87[EUR][1000 genomes]
rs1182636	0.87[EUR][1000 genomes]
rs1182639	0.87[EUR][1000 genomes]
rs1182640	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12029026	0.87[EUR][1000 genomes]
rs12030613	0.86[ASN][1000 genomes]
rs12045019	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12046739	0.95[EUR][1000 genomes]
rs1337108	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1337109	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1411706	0.81[EUR][1000 genomes]
rs1415294	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1415295	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1537498	0.95[EUR][1000 genomes]
rs1538029	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1556564	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1556565	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1610319	0.82[EUR][1000 genomes]
rs1932965	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1932966	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1932967	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1977224	0.82[EUR][1000 genomes]
rs1999819	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2008797	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2025101	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2027059	0.95[EUR][1000 genomes]
rs2027060	0.95[EUR][1000 genomes]
rs2039451	0.95[EUR][1000 genomes]
rs2039452	0.94[EUR][1000 genomes]
rs2039453	0.95[EUR][1000 genomes]
rs2050597	0.95[EUR][1000 genomes]
rs2065916	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2065917	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2077529	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2095265	0.95[EUR][1000 genomes]
rs2095266	0.95[EUR][1000 genomes]
rs2095267	0.93[EUR][1000 genomes]
rs2095268	0.95[EUR][1000 genomes]
rs2097838	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2107520	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2107521	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2158446	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2180977	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2244496	0.82[EUR][1000 genomes]
rs2298912	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2391164	0.95[EUR][1000 genomes]
rs2391194	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2391196	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2391199	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2391200	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2391201	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2811599	0.82[EUR][1000 genomes]
rs2811602	0.81[EUR][1000 genomes]
rs2893217	0.95[EUR][1000 genomes]
rs35054144	0.94[EUR][1000 genomes]
rs3790445	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3790446	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3898498	0.95[EUR][1000 genomes]
rs3898499	0.95[EUR][1000 genomes]
rs3928821	0.95[EUR][1000 genomes]
rs3936946	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4000726	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4120650	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4264007	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4417075	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4525050	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4526624	0.91[EUR][1000 genomes]
rs4638137	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4642893	0.94[EUR][1000 genomes]
rs4847217	0.94[EUR][1000 genomes]
rs4847232	0.95[EUR][1000 genomes]
rs4847234	0.95[EUR][1000 genomes]
rs4847247	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4847266	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4847280	0.95[EUR][1000 genomes]
rs4847285	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4847304	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4847305	0.95[EUR][1000 genomes]
rs4847309	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4847310	0.94[EUR][1000 genomes]
rs4847327	0.95[EUR][1000 genomes]
rs4847363	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4847370	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4847400	0.95[EUR][1000 genomes]
rs4847427	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6422515	0.95[EUR][1000 genomes]
rs6603993	0.95[EUR][1000 genomes]
rs6603994	0.95[EUR][1000 genomes]
rs6603999	0.95[EUR][1000 genomes]
rs6604000	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6604003	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6604004	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6604006	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6604010	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6604012	0.94[EUR][1000 genomes]
rs6604015	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6604018	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6604022	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6658232	0.90[EUR][1000 genomes]
rs6660296	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6661600	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6665121	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6665579	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6668283	0.86[EUR][1000 genomes]
rs6668584	0.91[EUR][1000 genomes]
rs6669914	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6671114	0.95[EUR][1000 genomes]
rs6671421	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6675246	0.95[EUR][1000 genomes]
rs6676454	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6678864	0.91[EUR][1000 genomes]
rs6679839	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6685705	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6687803	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6691038	0.89[EUR][1000 genomes]
rs6693371	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6696636	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6701130	0.95[EUR][1000 genomes]
rs6702031	0.85[EUR][1000 genomes]
rs6703467	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6704249	0.86[EUR][1000 genomes]
rs723909	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7416169	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7513815	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7514716	0.95[EUR][1000 genomes]
rs7515478	0.95[EUR][1000 genomes]
rs7515866	0.93[EUR][1000 genomes]
rs7516537	0.90[EUR][1000 genomes]
rs7519694	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7521345	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7526582	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7527835	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7529332	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7529630	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7532731	0.81[EUR][1000 genomes]
rs7538520	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7540407	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7543327	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7543964	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7545318	0.95[EUR][1000 genomes]
rs7549844	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7551340	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7551880	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7552085	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7553367	0.95[EUR][1000 genomes]
rs7554183	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7554868	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7556243	0.95[EUR][1000 genomes]
rs757469	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs914064	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs914966	0.95[EUR][1000 genomes]
rs927339	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs932637	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9439917	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9439920	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9439924	0.91[EUR][1000 genomes]
rs945724	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs963043	0.95[EUR][1000 genomes]
rs963044	0.95[EUR][1000 genomes]
rs9633481	0.95[EUR][1000 genomes]
rs9651256	0.95[EUR][1000 genomes]
rs9661812	0.84[EUR][1000 genomes]
rs9699810	0.94[EUR][1000 genomes]
rs976208	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs976209	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs980940	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2760473	chr18:25386088-25571466	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv909478	chr18:25392569-25478085	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv909479	chr18:25398940-25502001	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1055332	chr18:25426081-25459328	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25428600-25433600	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links