Variant report

Variant	rs6658232
Chromosome Location	chr1:93010704-93010705
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93008775..93011605-chr1:93017435..93019676,2	K562	blood:

Extended variants
information (count: 185 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs1017008	0.92[EUR][1000 genomes]
rs10218567	0.92[EUR][1000 genomes]
rs10218670	0.92[EUR][1000 genomes]
rs10735782	0.91[EUR][1000 genomes]
rs10735783	0.89[EUR][1000 genomes]
rs10735784	0.89[EUR][1000 genomes]
rs10747445	0.91[EUR][1000 genomes]
rs10747447	0.91[EUR][1000 genomes]
rs10747448	0.91[EUR][1000 genomes]
rs10747449	0.91[EUR][1000 genomes]
rs10747450	0.91[EUR][1000 genomes]
rs10747451	0.92[EUR][1000 genomes]
rs10782938	0.91[EUR][1000 genomes]
rs10782940	0.91[EUR][1000 genomes]
rs10782942	0.89[EUR][1000 genomes]
rs10874715	0.91[EUR][1000 genomes]
rs10874716	0.91[EUR][1000 genomes]
rs10874721	0.91[EUR][1000 genomes]
rs10874728	0.91[EUR][1000 genomes]
rs10874729	0.91[EUR][1000 genomes]
rs10874730	0.91[EUR][1000 genomes]
rs10874731	0.91[EUR][1000 genomes]
rs11164778	0.91[EUR][1000 genomes]
rs11164790	0.90[EUR][1000 genomes]
rs11164799	0.88[EUR][1000 genomes]
rs11164804	0.89[EUR][1000 genomes]
rs11164805	0.89[EUR][1000 genomes]
rs11164806	0.87[EUR][1000 genomes]
rs11164808	0.89[EUR][1000 genomes]
rs11164809	0.89[EUR][1000 genomes]
rs1182632	0.97[EUR][1000 genomes]
rs1182633	0.97[EUR][1000 genomes]
rs1182636	0.97[EUR][1000 genomes]
rs1182639	0.97[EUR][1000 genomes]
rs1182640	0.89[EUR][1000 genomes]
rs12045019	0.85[EUR][1000 genomes]
rs12046739	0.91[EUR][1000 genomes]
rs1337108	0.89[EUR][1000 genomes]
rs1337109	0.89[EUR][1000 genomes]
rs1415294	0.92[EUR][1000 genomes]
rs1415295	0.92[EUR][1000 genomes]
rs1537498	0.91[EUR][1000 genomes]
rs1538029	0.91[EUR][1000 genomes]
rs1556564	0.88[EUR][1000 genomes]
rs1556565	0.88[EUR][1000 genomes]
rs17579779	1.00[ASN][1000 genomes]
rs1932965	0.91[EUR][1000 genomes]
rs1932966	0.92[EUR][1000 genomes]
rs1932967	0.89[EUR][1000 genomes]
rs1999819	0.92[EUR][1000 genomes]
rs2008797	0.97[EUR][1000 genomes]
rs2025101	0.89[EUR][1000 genomes]
rs2027059	0.91[EUR][1000 genomes]
rs2027060	0.91[EUR][1000 genomes]
rs2039451	0.91[EUR][1000 genomes]
rs2039452	0.89[EUR][1000 genomes]
rs2039453	0.91[EUR][1000 genomes]
rs2050597	0.91[EUR][1000 genomes]
rs2065916	0.92[EUR][1000 genomes]
rs2065917	0.92[EUR][1000 genomes]
rs2077529	0.88[EUR][1000 genomes]
rs2095265	0.91[EUR][1000 genomes]
rs2095266	0.91[EUR][1000 genomes]
rs2095267	0.88[EUR][1000 genomes]
rs2095268	0.91[EUR][1000 genomes]
rs2097838	0.92[EUR][1000 genomes]
rs2107520	0.89[EUR][1000 genomes]
rs2107521	0.89[EUR][1000 genomes]
rs2158446	0.89[EUR][1000 genomes]
rs2180977	0.89[EUR][1000 genomes]
rs2298912	0.89[EUR][1000 genomes]
rs2391164	0.91[EUR][1000 genomes]
rs2391194	0.89[EUR][1000 genomes]
rs2391196	0.89[EUR][1000 genomes]
rs2391199	0.92[EUR][1000 genomes]
rs2391200	0.91[EUR][1000 genomes]
rs2391201	0.92[EUR][1000 genomes]
rs2893217	0.91[EUR][1000 genomes]
rs35054144	0.89[EUR][1000 genomes]
rs3790445	0.89[EUR][1000 genomes]
rs3790446	0.89[EUR][1000 genomes]
rs3898498	0.91[EUR][1000 genomes]
rs3898499	0.91[EUR][1000 genomes]
rs3928821	0.91[EUR][1000 genomes]
rs3936946	0.91[EUR][1000 genomes]
rs4000726	0.91[EUR][1000 genomes]
rs4000727	0.90[EUR][1000 genomes]
rs4120650	0.91[EUR][1000 genomes]
rs4264007	0.89[EUR][1000 genomes]
rs4417075	0.91[EUR][1000 genomes]
rs4525050	0.89[EUR][1000 genomes]
rs4526624	0.87[EUR][1000 genomes]
rs4638137	0.89[EUR][1000 genomes]
rs4642893	0.90[EUR][1000 genomes]
rs4847232	0.91[EUR][1000 genomes]
rs4847234	0.91[EUR][1000 genomes]
rs4847247	0.91[EUR][1000 genomes]
rs4847266	0.92[EUR][1000 genomes]
rs4847280	0.91[EUR][1000 genomes]
rs4847285	0.89[EUR][1000 genomes]
rs4847304	0.89[EUR][1000 genomes]
rs4847305	0.91[EUR][1000 genomes]
rs4847309	0.89[EUR][1000 genomes]
rs4847310	0.89[EUR][1000 genomes]
rs4847327	0.91[EUR][1000 genomes]
rs4847400	0.91[EUR][1000 genomes]
rs4847427	0.91[EUR][1000 genomes]
rs59679370	1.00[ASN][1000 genomes]
rs6422515	0.91[EUR][1000 genomes]
rs6603993	0.91[EUR][1000 genomes]
rs6603994	0.91[EUR][1000 genomes]
rs6603999	0.91[EUR][1000 genomes]
rs6604000	0.91[EUR][1000 genomes]
rs6604003	0.92[EUR][1000 genomes]
rs6604004	0.92[EUR][1000 genomes]
rs6604006	0.90[EUR][1000 genomes]
rs6604010	0.89[EUR][1000 genomes]
rs6604012	0.89[EUR][1000 genomes]
rs6604015	0.89[EUR][1000 genomes]
rs6604018	0.89[EUR][1000 genomes]
rs6604022	0.89[EUR][1000 genomes]
rs6660296	0.89[EUR][1000 genomes]
rs6661600	0.89[EUR][1000 genomes]
rs6665121	0.83[EUR][1000 genomes]
rs6665579	0.89[EUR][1000 genomes]
rs6668283	0.82[EUR][1000 genomes]
rs6668584	0.87[EUR][1000 genomes]
rs6669914	0.88[EUR][1000 genomes]
rs6671114	0.91[EUR][1000 genomes]
rs6671421	0.92[EUR][1000 genomes]
rs6675246	0.91[EUR][1000 genomes]
rs6676141	1.00[ASN][1000 genomes]
rs6676454	0.89[EUR][1000 genomes]
rs6678864	0.87[EUR][1000 genomes]
rs6679839	0.92[EUR][1000 genomes]
rs6687803	0.91[EUR][1000 genomes]
rs6691038	0.84[EUR][1000 genomes]
rs6696636	0.84[EUR][1000 genomes]
rs6701130	0.91[EUR][1000 genomes]
rs6702031	0.81[EUR][1000 genomes]
rs6704249	0.82[EUR][1000 genomes]
rs723909	0.89[EUR][1000 genomes]
rs7416169	0.92[EUR][1000 genomes]
rs7513815	0.89[EUR][1000 genomes]
rs7514716	0.91[EUR][1000 genomes]
rs7515478	0.91[EUR][1000 genomes]
rs7515866	0.88[EUR][1000 genomes]
rs7516537	0.86[EUR][1000 genomes]
rs7518357	1.00[ASN][1000 genomes]
rs7519694	0.88[EUR][1000 genomes]
rs7521345	0.89[EUR][1000 genomes]
rs7526582	0.87[EUR][1000 genomes]
rs7527835	0.92[EUR][1000 genomes]
rs7529332	0.91[EUR][1000 genomes]
rs7529630	0.91[EUR][1000 genomes]
rs7538520	0.91[EUR][1000 genomes]
rs7540407	0.91[EUR][1000 genomes]
rs7543327	0.89[EUR][1000 genomes]
rs7545318	0.91[EUR][1000 genomes]
rs7549844	0.89[EUR][1000 genomes]
rs7552085	0.89[EUR][1000 genomes]
rs7552212	1.00[ASN][1000 genomes]
rs7553367	0.91[EUR][1000 genomes]
rs7554183	0.84[EUR][1000 genomes]
rs7554868	0.89[EUR][1000 genomes]
rs7556243	0.91[EUR][1000 genomes]
rs757469	0.89[EUR][1000 genomes]
rs914064	0.92[EUR][1000 genomes]
rs914966	0.91[EUR][1000 genomes]
rs927339	0.92[EUR][1000 genomes]
rs932637	0.92[EUR][1000 genomes]
rs9439917	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9439920	0.89[EUR][1000 genomes]
rs945724	0.92[EUR][1000 genomes]
rs963043	0.91[EUR][1000 genomes]
rs963044	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9633481	0.91[EUR][1000 genomes]
rs9651256	0.91[EUR][1000 genomes]
rs9699810	0.90[EUR][1000 genomes]
rs976208	0.89[EUR][1000 genomes]
rs976209	0.89[EUR][1000 genomes]
rs980940	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1004381	chr1:92968173-93064823	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92968200-93042800	Weak transcription	HSMM	muscle
2	chr1:92972600-93013400	Weak transcription	Ovary	ovary
3	chr1:92976400-93042400	Weak transcription	Fetal Stomach	stomach
4	chr1:92977600-93013200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:92981800-93033400	Weak transcription	NHEK	skin
6	chr1:92983600-93066200	Weak transcription	Adipose Nuclei	Adipose
7	chr1:92994600-93066000	Weak transcription	Placenta	Placenta
8	chr1:92999400-93016600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:93001400-93024200	Weak transcription	Psoas Muscle	Psoas
10	chr1:93004400-93012400	Weak transcription	Fetal Kidney	kidney
11	chr1:93004400-93012600	Weak transcription	Fetal Intestine Large	intestine
12	chr1:93004400-93022200	Weak transcription	Pancreas	Pancrea
13	chr1:93004400-93028400	Weak transcription	Primary B cells from cord blood	blood
14	chr1:93004400-93032400	Weak transcription	Fetal Intestine Small	intestine
15	chr1:93004400-93033000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:93004400-93042200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:93004400-93042400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:93004400-93070000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr1:93005000-93021600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr1:93007000-93014000	Weak transcription	Aorta	Aorta
21	chr1:93007400-93021400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr1:93007600-93011200	Weak transcription	HSMMtube	muscle
23	chr1:93007800-93042600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:93008800-93012000	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:93009000-93011000	Enhancers	K562	blood
26	chr1:93009600-93017200	Weak transcription	Brain Hippocampus Middle	brain
27	chr1:93009600-93023800	Weak transcription	Liver	Liver
28	chr1:93009800-93028200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr1:93009800-93029200	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr1:93010200-93012000	Strong transcription	Left Ventricle	heart

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