Variant report

Variant	rs4847309
Chromosome Location	chr1:93222418-93222419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93215411..93218590-chr1:93221864..93223911,3	MCF-7	breast:
2	chr1:93214790..93219134-chr1:93222182..93225825,4	K562	blood:
3	chr1:93220670..93222907-chr1:93296640..93299176,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPL5-2	chr1:93221351-93222513	NONHSAT004467

Variant related genes	Relation type
ENSG00000234202	Chromatin interaction
ENSG00000122406	Chromatin interaction

Extended variants
information (count: 256 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:253)

rs_ID	r²[population]
rs1017008	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10218567	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10218571	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10218670	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1034219	1.00[ASN][1000 genomes]
rs10465754	1.00[ASN][1000 genomes]
rs10465756	0.90[ASN][1000 genomes]
rs10735778	1.00[ASN][1000 genomes]
rs10735779	1.00[ASN][1000 genomes]
rs10735782	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10735783	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735784	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10747444	1.00[ASN][1000 genomes]
rs10747445	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10747447	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10747448	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10747449	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10747450	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10747451	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10747452	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10782935	1.00[ASN][1000 genomes]
rs10782938	0.95[EUR][1000 genomes]
rs10782940	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10782942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10874712	1.00[ASN][1000 genomes]
rs10874715	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874716	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874721	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874728	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10874729	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10874730	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10874731	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11164773	1.00[ASN][1000 genomes]
rs11164778	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164780	0.95[ASN][1000 genomes]
rs11164790	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11164799	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11164805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164809	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164812	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11164813	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11164818	0.82[EUR][1000 genomes]
rs1182632	0.92[EUR][1000 genomes]
rs1182633	0.92[EUR][1000 genomes]
rs1182636	0.92[EUR][1000 genomes]
rs1182639	0.92[EUR][1000 genomes]
rs1182640	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12029026	0.93[EUR][1000 genomes]
rs12030613	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12045019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12046739	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12753280	0.82[ASN][1000 genomes]
rs1337108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337109	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1408916	1.00[ASN][1000 genomes]
rs1411706	0.86[EUR][1000 genomes]
rs1415294	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1415295	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1537498	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538029	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1556562	1.00[ASN][1000 genomes]
rs1556563	1.00[ASN][1000 genomes]
rs1556564	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1556565	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1570837	1.00[ASN][1000 genomes]
rs1610319	0.88[EUR][1000 genomes]
rs1932965	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1932966	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1932967	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977224	0.88[EUR][1000 genomes]
rs1999819	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2008797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025101	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027059	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027060	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039451	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039452	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039453	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050597	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065916	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2065917	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2077529	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095265	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095266	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095267	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095268	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2097838	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2107520	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107521	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151577	1.00[ASN][1000 genomes]
rs2158446	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2180977	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184193	0.90[ASN][1000 genomes]
rs2244496	0.88[EUR][1000 genomes]
rs2244588	0.80[EUR][1000 genomes]
rs2298912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391160	1.00[ASN][1000 genomes]
rs2391164	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391193	0.84[EUR][1000 genomes]
rs2391194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391196	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391199	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391200	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391201	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2774940	0.84[EUR][1000 genomes]
rs2774947	0.80[EUR][1000 genomes]
rs2811599	0.88[EUR][1000 genomes]
rs2811602	0.86[EUR][1000 genomes]
rs2893217	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35054144	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790446	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3898498	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3898499	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3928821	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3936946	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4000726	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4000727	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4120650	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4264007	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4375281	0.89[ASN][1000 genomes]
rs4417075	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4525050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4526624	0.91[EUR][1000 genomes]
rs4568842	1.00[ASN][1000 genomes]
rs4638137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642893	0.94[EUR][1000 genomes]
rs4847181	1.00[ASN][1000 genomes]
rs4847217	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847232	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847234	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4847247	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4847266	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4847280	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847285	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847305	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847310	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4847327	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847363	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847370	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4847377	1.00[ASN][1000 genomes]
rs4847400	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847427	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4970701	1.00[ASN][1000 genomes]
rs4970708	0.89[ASN][1000 genomes]
rs4970709	0.89[ASN][1000 genomes]
rs4970710	0.89[ASN][1000 genomes]
rs4970712	1.00[ASN][1000 genomes]
rs6422512	1.00[ASN][1000 genomes]
rs6422513	1.00[ASN][1000 genomes]
rs6422515	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603980	0.89[ASN][1000 genomes]
rs6603981	1.00[ASN][1000 genomes]
rs6603982	1.00[ASN][1000 genomes]
rs6603984	1.00[ASN][1000 genomes]
rs6603985	1.00[ASN][1000 genomes]
rs6603987	1.00[ASN][1000 genomes]
rs6603988	1.00[ASN][1000 genomes]
rs6603990	1.00[ASN][1000 genomes]
rs6603993	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603994	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603999	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604000	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6604003	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6604004	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6604006	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6604010	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604012	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6604015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6604022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656432	1.00[ASN][1000 genomes]
rs6658232	0.89[EUR][1000 genomes]
rs6660296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661134	1.00[ASN][1000 genomes]
rs6661600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665121	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665579	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6668283	0.86[EUR][1000 genomes]
rs6668584	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669914	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6671114	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6671421	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6675246	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6676454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6678864	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679839	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6685705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6686702	0.89[ASN][1000 genomes]
rs6687803	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6691038	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692187	1.00[ASN][1000 genomes]
rs6693371	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6696173	1.00[ASN][1000 genomes]
rs6696636	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701130	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6702031	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6703467	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6704249	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs723909	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728629	0.83[EUR][1000 genomes]
rs7416169	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7513624	0.84[EUR][1000 genomes]
rs7513815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514716	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7515478	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7515577	1.00[ASN][1000 genomes]
rs7515866	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516141	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516537	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7519694	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7521345	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7526582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527835	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7529332	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7529630	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7532731	0.86[EUR][1000 genomes]
rs7538520	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7540407	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7543327	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543964	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7545318	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549844	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551340	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7551880	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7552085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553367	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556243	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs914064	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs914966	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927339	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs932637	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9439917	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9439920	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9439924	0.97[EUR][1000 genomes]
rs945724	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs963043	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963044	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633481	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651256	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9661812	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9699810	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980940	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989653	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv871263	chr1:93196273-93248228	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93192400-93226400	Weak transcription	Esophagus	oesophagus
2	chr1:93193000-93223800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:93200200-93224000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:93209200-93227800	Weak transcription	Primary B cells from cord blood	blood
5	chr1:93211800-93249200	Weak transcription	Fetal Stomach	stomach
6	chr1:93214000-93224200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:93214000-93224600	Weak transcription	Psoas Muscle	Psoas
8	chr1:93214000-93231200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr1:93214000-93240000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:93214000-93248400	Weak transcription	Lung	lung
11	chr1:93218600-93223600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:93219400-93224800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:93219600-93223000	Weak transcription	HSMM	muscle
14	chr1:93219600-93224600	Weak transcription	Osteobl	bone
15	chr1:93219800-93225600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:93220000-93223800	Weak transcription	HMEC	breast
17	chr1:93220200-93227600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:93220400-93224200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:93220400-93225000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:93220400-93225800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:93220400-93232800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:93220800-93222800	Enhancers	Fetal Heart	heart
23	chr1:93220800-93223200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr1:93221200-93222600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:93221200-93222600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr1:93221200-93222800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:93221200-93222800	Flanking Active TSS	Fetal Lung	lung
28	chr1:93221400-93222600	Enhancers	Gastric	stomach
29	chr1:93221400-93223400	Enhancers	Right Ventricle	heart
30	chr1:93221400-93233800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:93221600-93222600	Enhancers	Brain Substantia Nigra	brain
32	chr1:93221600-93222800	Enhancers	Brain Cingulate Gyrus	brain
33	chr1:93221600-93222800	Enhancers	Stomach Mucosa	stomach
34	chr1:93221600-93223400	Enhancers	Right Atrium	heart
35	chr1:93221600-93224800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr1:93221800-93222600	Enhancers	Brain Germinal Matrix	brain
37	chr1:93221800-93222600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr1:93221800-93223400	Weak transcription	A549	lung
39	chr1:93221800-93224600	Weak transcription	Fetal Intestine Small	intestine
40	chr1:93222000-93222600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:93222000-93222600	Enhancers	Brain Hippocampus Middle	brain
42	chr1:93222000-93222600	Enhancers	Ovary	ovary
43	chr1:93222000-93222800	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr1:93222000-93224400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr1:93222000-93248000	Weak transcription	HSMMtube	muscle
46	chr1:93222200-93222800	Enhancers	NHDF-Ad	bronchial
47	chr1:93222200-93223000	Enhancers	HepG2	liver
48	chr1:93222400-93222600	Enhancers	NHLF	lung
49	chr1:93222400-93222800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr1:93222400-93222800	Enhancers	Brain Angular Gyrus	brain

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