The 2.0 version of rSNPBase

Variant report

Variant rs2391194
Chromosome Location chr1:93220532-93220533
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93190000-93221800 Weak transcription Rectal Smooth Muscle rectum
2 chr1:93191200-93221600 Weak transcription Fetal Intestine Large intestine
3 chr1:93192400-93221200 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr1:93192400-93226400 Weak transcription Esophagus oesophagus
5 chr1:93193000-93223800 Weak transcription Duodenum Mucosa Duodenum
6 chr1:93200200-93224000 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr1:93209200-93222400 Weak transcription Primary neutrophils fromperipheralblood blood
8 chr1:93209200-93227800 Weak transcription Primary B cells from cord blood blood
9 chr1:93210000-93221200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr1:93211800-93249200 Weak transcription Fetal Stomach stomach
11 chr1:93213800-93221200 Weak transcription HUES6 Cell Line embryonic stem cell
12 chr1:93213800-93221200 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:93213800-93221200 Weak transcription Gastric stomach
14 chr1:93214000-93221200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr1:93214000-93221200 Weak transcription Placenta Placenta
16 chr1:93214000-93224200 Weak transcription Fetal Adrenal Gland Adrenal Gland
17 chr1:93214000-93224600 Weak transcription Psoas Muscle Psoas
18 chr1:93214000-93231200 Weak transcription Primary monocytes fromperipheralblood blood
19 chr1:93214000-93240000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr1:93214000-93248400 Weak transcription Lung lung
21 chr1:93214200-93221200 Weak transcription Monocytes-CD14+_RO01746 blood
22 chr1:93218000-93220600 Enhancers Muscle Satellite Cultured Cells --
23 chr1:93218000-93220600 Enhancers NHLF lung
24 chr1:93218200-93221800 Enhancers NH-A brain
25 chr1:93218400-93220600 Enhancers NHDF-Ad bronchial
26 chr1:93218600-93221000 Weak transcription Brain Angular Gyrus brain
27 chr1:93218600-93223600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
28 chr1:93218800-93220800 Weak transcription Brain Anterior Caudate brain
29 chr1:93218800-93220800 Weak transcription Brain Hippocampus Middle brain
30 chr1:93218800-93221200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr1:93219000-93221000 Weak transcription Brain Cingulate Gyrus brain
32 chr1:93219200-93220600 Enhancers Brain Inferior Temporal Lobe brain
33 chr1:93219400-93224800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:93219600-93220600 Active TSS Fetal Brain Male brain
35 chr1:93219600-93223000 Weak transcription HSMM muscle
36 chr1:93219600-93224600 Weak transcription Osteobl bone
37 chr1:93219800-93221200 Weak transcription A549 lung
38 chr1:93219800-93225600 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr1:93220000-93221000 ZNF genes & repeats Fetal Muscle Leg muscle
40 chr1:93220000-93221200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr1:93220000-93221200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:93220000-93221400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr1:93220000-93221400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr1:93220000-93221600 Weak transcription Stomach Mucosa stomach
45 chr1:93220000-93223800 Weak transcription HMEC breast
46 chr1:93220200-93227600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr1:93220400-93220800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr1:93220400-93221000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr1:93220400-93221400 Weak transcription K562 blood
50 chr1:93220400-93221400 Weak transcription NHEK skin

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Last update: Aug 31, 2015