Variant report

Variant	rs4098278
Chromosome Location	chr1:93117179-93117180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93110037..93112267-chr1:93116205..93118057,2	K562	blood:

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1017008	0.82[EUR][1000 genomes]
rs10218567	0.82[EUR][1000 genomes]
rs10218670	0.82[EUR][1000 genomes]
rs10735782	0.83[EUR][1000 genomes]
rs10747445	0.83[EUR][1000 genomes]
rs10747447	0.83[EUR][1000 genomes]
rs10747448	0.83[EUR][1000 genomes]
rs10747449	0.83[EUR][1000 genomes]
rs10747450	0.83[EUR][1000 genomes]
rs10747451	0.82[EUR][1000 genomes]
rs10782938	0.83[EUR][1000 genomes]
rs10782940	0.83[EUR][1000 genomes]
rs10874715	0.83[EUR][1000 genomes]
rs10874716	0.83[EUR][1000 genomes]
rs10874721	0.83[EUR][1000 genomes]
rs10874728	0.83[EUR][1000 genomes]
rs10874729	0.83[EUR][1000 genomes]
rs10874730	0.83[EUR][1000 genomes]
rs10874731	0.83[EUR][1000 genomes]
rs11164778	0.83[EUR][1000 genomes]
rs11164790	0.82[EUR][1000 genomes]
rs12046739	0.83[EUR][1000 genomes]
rs1415294	0.82[EUR][1000 genomes]
rs1415295	0.82[EUR][1000 genomes]
rs1537498	0.83[EUR][1000 genomes]
rs1538029	0.83[EUR][1000 genomes]
rs1556564	0.81[EUR][1000 genomes]
rs1556565	0.81[EUR][1000 genomes]
rs1932965	0.83[EUR][1000 genomes]
rs1932966	0.82[EUR][1000 genomes]
rs1999819	0.82[EUR][1000 genomes]
rs2027059	0.83[EUR][1000 genomes]
rs2027060	0.83[EUR][1000 genomes]
rs2039451	0.83[EUR][1000 genomes]
rs2039452	0.82[EUR][1000 genomes]
rs2039453	0.83[EUR][1000 genomes]
rs2050597	0.83[EUR][1000 genomes]
rs2065916	0.82[EUR][1000 genomes]
rs2065917	0.82[EUR][1000 genomes]
rs2095265	0.83[EUR][1000 genomes]
rs2095266	0.83[EUR][1000 genomes]
rs2095267	0.81[EUR][1000 genomes]
rs2095268	0.83[EUR][1000 genomes]
rs2097838	0.82[EUR][1000 genomes]
rs2391164	0.83[EUR][1000 genomes]
rs2391199	0.82[EUR][1000 genomes]
rs2391200	0.81[EUR][1000 genomes]
rs2391201	0.82[EUR][1000 genomes]
rs2893217	0.83[EUR][1000 genomes]
rs3898498	0.83[EUR][1000 genomes]
rs3898499	0.83[EUR][1000 genomes]
rs3928821	0.83[EUR][1000 genomes]
rs3936946	0.83[EUR][1000 genomes]
rs4000726	0.81[EUR][1000 genomes]
rs4120650	0.83[EUR][1000 genomes]
rs4417075	0.83[EUR][1000 genomes]
rs4642893	0.82[EUR][1000 genomes]
rs4847232	0.83[EUR][1000 genomes]
rs4847234	0.83[EUR][1000 genomes]
rs4847247	0.83[EUR][1000 genomes]
rs4847266	0.82[EUR][1000 genomes]
rs4847280	0.83[EUR][1000 genomes]
rs4847305	0.83[EUR][1000 genomes]
rs4847327	0.83[EUR][1000 genomes]
rs4847400	0.83[EUR][1000 genomes]
rs4847427	0.83[EUR][1000 genomes]
rs6422515	0.83[EUR][1000 genomes]
rs6603993	0.83[EUR][1000 genomes]
rs6603994	0.83[EUR][1000 genomes]
rs6603999	0.83[EUR][1000 genomes]
rs6604000	0.83[EUR][1000 genomes]
rs6604003	0.82[EUR][1000 genomes]
rs6604004	0.82[EUR][1000 genomes]
rs6671114	0.83[EUR][1000 genomes]
rs6671421	0.82[EUR][1000 genomes]
rs6675246	0.83[EUR][1000 genomes]
rs6679839	0.82[EUR][1000 genomes]
rs6687803	0.83[EUR][1000 genomes]
rs6701130	0.83[EUR][1000 genomes]
rs7416169	0.82[EUR][1000 genomes]
rs7514716	0.83[EUR][1000 genomes]
rs7515478	0.83[EUR][1000 genomes]
rs7515866	0.81[EUR][1000 genomes]
rs7527835	0.82[EUR][1000 genomes]
rs7529332	0.83[EUR][1000 genomes]
rs7529630	0.83[EUR][1000 genomes]
rs7538520	0.83[EUR][1000 genomes]
rs7540407	0.81[EUR][1000 genomes]
rs7545318	0.83[EUR][1000 genomes]
rs7553367	0.83[EUR][1000 genomes]
rs7556243	0.83[EUR][1000 genomes]
rs914064	0.82[EUR][1000 genomes]
rs914966	0.83[EUR][1000 genomes]
rs927339	0.82[EUR][1000 genomes]
rs932637	0.82[EUR][1000 genomes]
rs9439917	0.83[EUR][1000 genomes]
rs945724	0.82[EUR][1000 genomes]
rs963043	0.83[EUR][1000 genomes]
rs963044	0.83[EUR][1000 genomes]
rs9633481	0.83[EUR][1000 genomes]
rs9651256	0.83[EUR][1000 genomes]
rs9699810	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93052000-93119400	Weak transcription	NHEK	skin
2	chr1:93053600-93166200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:93062000-93118800	Weak transcription	HMEC	breast
4	chr1:93065200-93118600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:93065800-93119600	Weak transcription	NH-A	brain
6	chr1:93069600-93119600	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:93098400-93205400	Weak transcription	NHLF	lung
8	chr1:93100600-93118600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:93101200-93118600	Weak transcription	Aorta	Aorta
10	chr1:93101200-93118800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:93101400-93118200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:93101400-93118200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr1:93101400-93118200	Weak transcription	Left Ventricle	heart
14	chr1:93101400-93118400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:93101400-93118400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:93101400-93118400	Weak transcription	Fetal Intestine Small	intestine
17	chr1:93101400-93118400	Weak transcription	Fetal Stomach	stomach
18	chr1:93101400-93118600	Weak transcription	Lung	lung
19	chr1:93101400-93118600	Weak transcription	Right Ventricle	heart
20	chr1:93101400-93118800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:93101400-93119000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:93101400-93119000	Weak transcription	Gastric	stomach
23	chr1:93101600-93118400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr1:93101600-93118600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr1:93101600-93120200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:93101600-93163600	Weak transcription	Colonic Mucosa	Colon
27	chr1:93101800-93118200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr1:93101800-93118600	Weak transcription	HSMMtube	muscle
29	chr1:93101800-93119200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:93101800-93119600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:93102000-93117600	Weak transcription	Fetal Intestine Large	intestine
32	chr1:93102000-93118200	Weak transcription	Fetal Muscle Leg	muscle
33	chr1:93102000-93118400	Weak transcription	Primary B cells from cord blood	blood
34	chr1:93102000-93118600	Weak transcription	Adipose Nuclei	Adipose
35	chr1:93102000-93118800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr1:93102000-93118800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr1:93102000-93119000	Weak transcription	Placenta	Placenta
38	chr1:93102000-93119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr1:93102000-93119800	Weak transcription	Brain Angular Gyrus	brain
40	chr1:93102000-93157600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr1:93102200-93117800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:93102200-93117800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:93102200-93118200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr1:93102200-93118200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:93102200-93118600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:93102200-93118600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr1:93102200-93119000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:93106800-93118800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr1:93106800-93118800	Weak transcription	Pancreas	Pancrea
50	chr1:93106800-93119000	Weak transcription	Fetal Lung	lung

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