Variant report

Variant	rs2027061
Chromosome Location	chr1:93001430-93001431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10465753	0.81[EUR][1000 genomes]
rs11164770	0.87[EUR][1000 genomes]
rs1408916	0.81[EUR][1000 genomes]
rs2151577	0.81[EUR][1000 genomes]
rs2391160	0.81[EUR][1000 genomes]
rs4375281	0.81[EUR][1000 genomes]
rs4568842	0.81[EUR][1000 genomes]
rs4970701	0.81[EUR][1000 genomes]
rs4970708	0.81[EUR][1000 genomes]
rs4970709	0.81[EUR][1000 genomes]
rs4970710	0.81[EUR][1000 genomes]
rs4970712	0.81[EUR][1000 genomes]
rs6603979	0.81[EUR][1000 genomes]
rs6603981	0.81[EUR][1000 genomes]
rs6603982	0.81[EUR][1000 genomes]
rs6603991	0.81[EUR][1000 genomes]
rs6686702	0.81[EUR][1000 genomes]
rs6696173	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1004381	chr1:92968173-93064823	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92968200-93042800	Weak transcription	HSMM	muscle
2	chr1:92972600-93013400	Weak transcription	Ovary	ovary
3	chr1:92973800-93002200	Weak transcription	Fetal Intestine Large	intestine
4	chr1:92976400-93042400	Weak transcription	Fetal Stomach	stomach
5	chr1:92977600-93010600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:92977600-93013200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:92979600-93002200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:92981800-93004000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:92981800-93033400	Weak transcription	NHEK	skin
10	chr1:92983600-93066200	Weak transcription	Adipose Nuclei	Adipose
11	chr1:92986800-93002400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:92990800-93003800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:92993000-93003600	Weak transcription	Fetal Intestine Small	intestine
14	chr1:92993000-93007400	Weak transcription	Left Ventricle	heart
15	chr1:92993400-93002200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr1:92993800-93003600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:92993800-93007200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:92994000-93002400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:92994400-93002200	Weak transcription	Liver	Liver
20	chr1:92994600-93066000	Weak transcription	Placenta	Placenta
21	chr1:92998800-93001800	Weak transcription	HepG2	liver
22	chr1:92999400-93016600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:93000600-93001800	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr1:93000600-93002000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr1:93000600-93002000	Enhancers	Dnd41	blood
26	chr1:93000600-93002200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr1:93001000-93001800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr1:93001200-93003000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr1:93001200-93003600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr1:93001400-93001800	Enhancers	Primary T cells from cord blood	blood
31	chr1:93001400-93002000	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr1:93001400-93002200	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr1:93001400-93003400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr1:93001400-93004000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr1:93001400-93024200	Weak transcription	Psoas Muscle	Psoas

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