The 2.0 version of rSNPBase

Variant report

Variant rs7541598
Chromosome Location chr1:225658814-225658815
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:225649800-225662600 Weak transcription Pancreas Pancrea
2 chr1:225651400-225662400 Weak transcription Fetal Brain Male brain
3 chr1:225653600-225662400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:225653600-225662400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:225653800-225659600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr1:225655400-225662400 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr1:225655600-225677000 Weak transcription Right Atrium heart
8 chr1:225655800-225661200 Weak transcription Brain Hippocampus Middle brain
9 chr1:225655800-225661800 Weak transcription Spleen Spleen
10 chr1:225655800-225662000 Weak transcription Right Ventricle heart
11 chr1:225656000-225659200 Enhancers Fetal Muscle Leg muscle
12 chr1:225656200-225659800 Enhancers Stomach Smooth Muscle stomach
13 chr1:225656400-225660000 Enhancers Fetal Thymus thymus
14 chr1:225656400-225662400 Weak transcription Liver Liver
15 chr1:225656400-225662600 Weak transcription Thymus Thymus
16 chr1:225656600-225661800 Weak transcription Primary neutrophils fromperipheralblood blood
17 chr1:225656600-225662000 Weak transcription Lung lung
18 chr1:225656600-225662600 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr1:225656800-225661000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr1:225656800-225662400 Weak transcription Primary monocytes fromperipheralblood blood
21 chr1:225656800-225662800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr1:225656800-225663000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr1:225657000-225661200 Weak transcription Primary T cells from cord blood blood
24 chr1:225657000-225662000 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr1:225657000-225662400 Weak transcription Primary B cells from cord blood blood
26 chr1:225657000-225662400 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr1:225657200-225660800 Weak transcription Primary T cells fromperipheralblood blood
28 chr1:225657200-225660800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
29 chr1:225657200-225661000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
30 chr1:225657200-225661000 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr1:225657200-225661200 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr1:225657200-225662400 Weak transcription Primary B cells from peripheral blood blood
33 chr1:225657400-225660800 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr1:225657400-225660800 Weak transcription Primary T helper cells fromperipheralblood blood
35 chr1:225657400-225660800 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr1:225657400-225662000 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr1:225657600-225662400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
38 chr1:225657800-225659000 Enhancers Colon Smooth Muscle Colon
39 chr1:225658000-225659000 Enhancers Rectal Smooth Muscle rectum
40 chr1:225658400-225659600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr1:225658600-225660000 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
42 chr1:225658800-225662400 Weak transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015